Shewanella benthica: SHEWBE_0356
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Entry
SHEWBE_0356 CDS
T06707
Symbol
trmA
Name
(GenBank) tRNA (uracil-5-)-methyltransferase
KO
K00557
tRNA (uracil-5-)-methyltransferase [EC:
2.1.1.35
]
Organism
sbk
Shewanella benthica
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbk03016
]
SHEWBE_0356 (trmA)
Enzymes [BR:
sbk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.35 tRNA (uracil54-C5)-methyltransferase
SHEWBE_0356 (trmA)
Transfer RNA biogenesis [BR:
sbk03016
]
Prokaryotic type
tRNA modification factors
Methyltransferases
SHEWBE_0356 (trmA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_4
Methyltransf_15
Methyltransf_25
MTS
Methyltransf_31
TRM5-TYW2_MTfase
Cons_hypoth95
PrmA
Methyltransf_11
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
SQH74345
UniProt:
A0A330LWV4
LinkDB
All DBs
Position
SHEWBE:319444..320541
Genome browser
AA seq
365 aa
AA seq
DB search
MNLAAMDPKTYDAQLEKKRIKLEQIFTDFDTPRLEVFGSETAHYRMRCEFRIWHDGDDMY
YYMFDKALDSKVRCDQFLPASSLINEMMPALIEKLKPNTILRHRLFQIDFLSTLSGEILV
SLLYHKQLDQQWEAEAKVLKEKLASRFKVNLIGRARKQKLIFDKDFVVESLNVNGEQLHY
HQIENSFTQPNGKVAVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFDRVLATELA
KPSVQSAQYNIEINKIDNLQIIRMSAEDFTDAMAKKRSFRRLEGIDLDSYNCNTIFVDPP
RAGLDSNTVKLVQGYERIVYISCNPNTLTENLAELTKTHNITRFALFDQFPYTDHMESGV
FLEKK
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagcagcaatggatcctaagacctatgatgcgcaactcgaaaaaaagcgcatc
aagctggaacagatattcacagactttgatacgccaaggttagaagtctttggctctgaa
acagcccattatcgtatgcgctgtgaattccgcatctggcatgacggtgacgacatgtat
tactacatgttcgataaagctctggacagtaaggttcgttgtgaccaatttcttccagcg
agtagcttgattaacgagatgatgcccgccttaatcgaaaagttaaagcctaacaccata
ctaagacatagattattccaaatcgactttctctctactctcagtggcgagatcttagtt
tccctactttaccataagcaactggatcagcagtgggaagcagaggctaaggttcttaaa
gagaaactagcatctagattcaaggttaacttgatcggtagagcccgaaaacagaaactc
attttcgataaagatttcgtggttgaaagcctaaacgtgaacggtgagcagctccactat
catcaaattgaaaatagcttcactcagcccaatggcaaggtcgcggtaaaaatgctcgaa
tgggcaatagatgtcactaaaaacagcacgggtgatctgttagagctatattgtggtaat
ggcaatttttctatcgctttagcgcaaaacttcgatcgggttctcgccactgagctggcg
aaaccttcggttcagtcggcgcaatacaatatcgaaatcaacaagatcgacaacttgcag
atcatacgtatgtctgcagaagacttcaccgatgcaatggctaaaaagagaagctttaga
cgcttggaagggatagatctagacagttataattgtaataccatcttcgttgacccacca
cgagcaggattagattcaaataccgtcaagctagtgcaaggctatgagcgtatcgtatac
atatcttgcaaccctaacaccttgactgaaaacttagccgagctgaccaagacacacaat
attactcgcttcgctctattcgatcagttcccatatacagaccatatggaatcaggtgtc
ttcttagagaagaagtaa
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