Shewanella benthica: SHEWBE_0474
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Entry
SHEWBE_0474 CDS
T06707
Name
(GenBank) putative long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sbk
Shewanella benthica
Pathway
sbk00061
Fatty acid biosynthesis
sbk00071
Fatty acid degradation
sbk01100
Metabolic pathways
sbk01212
Fatty acid metabolism
sbk02024
Quorum sensing
sbk04146
Peroxisome
Module
sbk_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SHEWBE_0474
00071 Fatty acid degradation
SHEWBE_0474
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SHEWBE_0474
09145 Cellular community - prokaryotes
02024 Quorum sensing
SHEWBE_0474
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sbk01004
]
SHEWBE_0474
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sbk04147
]
SHEWBE_0474
Enzymes [BR:
sbk01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SHEWBE_0474
Lipid biosynthesis proteins [BR:
sbk01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SHEWBE_0474
Exosome [BR:
sbk04147
]
Exosomal proteins
Exosomal proteins of breast milk
SHEWBE_0474
Exosomal proteins of breast cancer cells
SHEWBE_0474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
PDE12-like_N
Motif
Other DBs
NCBI-ProteinID:
SQH74463
UniProt:
A0A330LZD4
LinkDB
All DBs
Position
SHEWBE:complement(436399..438195)
Genome browser
AA seq
598 aa
AA seq
DB search
MSLEQYHLTRLIKKQSLQLGDAIALEGYEMAAPWHQVSWSDFDSISTHVAQALIHFGFDA
QDCVAILAQNSPQWTCADIGCLKTRAVVVPIYPTSTFGQASYIIDDAEAKLIFAGDQTHY
EMACKLTEVCNSLVQVVVFDKSVTLQDNANHHHFDDLIADSYPAKTLIELDKRLEAANLD
DLLTLIYTSGTTGEPKGVMLDYRNFASMVRQHDGFLPFTPGDVSLAFLPLSHVFERCWSF
FVLSSGGHNVYLQNPMAVKEAIVQVRPHTLCVVPRFLEKVYSAVQDKVSKAPSSRQKLFA
WAMDVGHRQSEVGQGRKMASLALNLQWKLADKLVFSKLKQVLGGRLKFMPVGGAALDPTV
SAFFQSIDVPVLCGYGMTETTATATCNTLANRVPGSNGNAIPEVEIKLGKNNEILVRGDT
VMRGYYNRSQETADTFENGWLKTGDAGRIDEQGNLFITDRIKELMKTSNGKYIAPQRVEG
KVGCCPFIEQVAIVADAKNYVTALIVPAFELLETWAKEKGLHYESPMELLRHSHVIEHFE
QRLKTLQIDLAGFEKIKKFTLLPEAFSMEAGLITPTMKLRRKVIYHKYAREISAMYGK
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcactcgagcagtatcatttaacacgattaatcaaaaagcagagcctgcaactcggc
gatgctatcgcgctcgaaggatacgaaatggcggctccatggcatcaggtgagttggagc
gatttcgatagcatcagcactcatgtcgctcaagccttgattcattttggcttcgatgct
caagactgtgtggccatccttgcacagaatagcccacagtggacttgtgccgatattggt
tgtctcaagactcgcgccgttgtcgtgcctatctatccgaccagcaccttcggccaggcg
agttatattatcgatgatgccgaggcgaaactcatcttcgccggcgatcaaactcattat
gagatggcctgtaaactcaccgaagtttgtaacagtctggtacaggtggtggtgttcgat
aagagcgtcaccctgcaagacaatgccaatcatcatcacttcgacgatctaattgccgac
agttatccggcaaagacgctcatcgagttggacaaacgactcgaagcggcaaacttggat
gacttgctaaccctgatatacacctcaggtactactggtgagccaaaaggcgtgatgttg
gattaccgtaattttgcctctatggtacgtcagcacgatggtttcctgccatttactccc
ggtgacgtgtctctggcctttctgcccctgagtcatgtgttcgaacgttgctggagcttc
ttcgtgcttagcagtggtggtcataacgtctatttgcaaaaccctatggcggtcaaagaa
gccatagtccaggtacgtccacacacgctttgtgtggtaccaagatttttagagaaggtg
tatagcgcggtacaggataaagtctctaaggcaccgagtagccgtcagaagttgttcgcc
tgggccatggatgtgggtcatcgtcaatctgaggtgggtcagggccgtaagatggcatca
ctggctttgaacctgcaatggaaattggccgataaactggtgtttagcaagctaaaacag
gtactgggcggacgcctcaagtttatgcctgttggtggtgctgcgctggatcctaccgtg
agtgccttcttccagagtattgacgtacctgtgttgtgtggctacggcatgacagaaacg
actgccactgccacctgtaatactctggctaatcgagttcccggctctaatggtaatgcc
atacccgaagtcgagatcaaattaggtaaaaataacgagatacttgttcgcggcgatacc
gtgatgcgtggttactataaccgttcacaagaaaccgccgataccttcgaaaatggttgg
ttgaagactggcgatgcgggtcgtatcgatgaacaaggtaacctgtttattaccgaccgt
atcaaagagctgatgaaaacctctaatggtaagtatatcgccccgcaacgcgtcgagggt
aaggtgggatgttgtcctttcatcgagcaagttgccatagtggccgatgctaagaactat
gtcaccgccttgatcgtaccagcattcgagttattagagacctgggctaaagagaagggg
ctgcattatgaatcgcccatggagctgttacgtcacagccatgtcatcgagcatttcgag
caacgcctcaagacattgcagattgatctggctggtttcgagaagattaagaagtttact
ctgttaccggaagccttctctatggaagcgggtctaatcaccccgaccatgaagttacgc
cgtaaggtgatttatcataagtatgcgcgcgagatcagcgctatgtatggtaaatag
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