Shewanella benthica: SHEWBE_0629
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Entry
SHEWBE_0629 CDS
T06707
Symbol
yrdD
Name
(GenBank) DNA topoisomerase type IA zn finger domain protein
KO
K07479
putative DNA topoisomerase
Organism
sbk
Shewanella benthica
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09190 Not Included in Pathway or Brite
09192 Unclassified: genetic information processing
99976 Replication and repair
SHEWBE_0629 (yrdD)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Zn_ribbon_Top1
Zn_Ribbon_1
Zn_ribbon_FGT1_2
DUF7575
Zn_ribbon_LysW
CoiA_N
DNA_ligase_ZBD
Zn_ribbon_PaaD
IBR_1
DUF7577
Motif
Other DBs
NCBI-ProteinID:
SQH74614
UniProt:
A0A330LYZ2
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Position
SHEWBE:580391..580993
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AA seq
200 aa
AA seq
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MVKWLIADLTENPMSKIDDQLFSSHEHALEKEYELCPKCGSELSVRHSKHGGFIGCNSYP
VCDYTRPLVQHESIETQAIPDSECPECGHELAVKSGRFGIFIGCTNYPDCKHIEKHDKAD
PEDQIACPSCKIGKIEHRTSRFGKSFYACNGYPKCKFLVNYRPVAEACPECGFGILIERK
GAAGSRLECPKKTCKYKRAV
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
ttggtaaaatggctgatagccgatttaaccgagaaccccatgtctaaaattgatgatcaa
ctgtttagttcccatgaacatgccttagagaaagagtatgaactctgccctaagtgcggc
agtgagctatcggttcggcatagtaaacatggcggtttcattgggtgtaatagttatcct
gtatgtgattatactcggccgttagtacaacatgagtctattgaaactcaagccatccct
gattcagaatgccccgagtgtggccatgaactggcggtaaagtctggacgatttggcatt
tttattggctgtacaaattaccccgattgtaagcatattgaaaagcatgataaggcagat
cctgaagatcagattgcttgcccaagttgtaaaatcgggaagattgagcatagaaccagt
cggtttggtaaaagtttttatgcctgcaacggttaccctaagtgtaagtttttagtgaac
tatcgacccgtagccgaagcttgtcccgagtgtggtttcggcatcctgatagagaggaaa
ggtgccgctgggtctcgcttagagtgtccgaagaagacatgcaagtataaaagagcagtc
taa
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