Shewanella benthica: SHEWBE_0675
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Entry
SHEWBE_0675 CDS
T06707
Symbol
polA
Name
(GenBank) fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sbk
Shewanella benthica
Pathway
sbk03030
DNA replication
sbk03410
Base excision repair
sbk03420
Nucleotide excision repair
sbk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHEWBE_0675 (polA)
03410 Base excision repair
SHEWBE_0675 (polA)
03420 Nucleotide excision repair
SHEWBE_0675 (polA)
03440 Homologous recombination
SHEWBE_0675 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbk03032
]
SHEWBE_0675 (polA)
03400 DNA repair and recombination proteins [BR:
sbk03400
]
SHEWBE_0675 (polA)
Enzymes [BR:
sbk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SHEWBE_0675 (polA)
DNA replication proteins [BR:
sbk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SHEWBE_0675 (polA)
DNA repair and recombination proteins [BR:
sbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SHEWBE_0675 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SHEWBE_0675 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WH_GTF3C1_N
Motif
Other DBs
NCBI-ProteinID:
SQH74652
UniProt:
A0A330LXB5
LinkDB
All DBs
Position
SHEWBE:complement(613236..615989)
Genome browser
AA seq
917 aa
AA seq
DB search
MPKIAENPLVLVDGSSYLYRAYYSPPHLTNSKGEATGAVYGVINMLRSLLKQYEPTQMAV
IFDAKGKTFRNDMYADYKAQRPPMPDDLRTQIEPLHRIIRAMGLPLVCISGVEADDVIGT
ISTQASKEGRSVLISTGDKDMAQLVDDNVTLINTMTNTIMGPDEVTEKFGVGPELIIDLL
ALQGDKADNIPGLPGVGEKTAVAMLTGAGGIDKILAAPEKMPELGFRGAKTMPAKLAEHR
DILELSYALATIKLDVELEQDWQDLTIEPANRDELIKCFAEMEFKRWLAEVLDNKTGSSK
GEAATDEEVIKQDIQTEYTTIYTHEELDLWIDKLTNADLIAIDTETTSLNYMEAKLVGIS
FSIEAGKAAYLPLGHDYLDAPEQLDQAEALAKLKPLLENPELKKVGQNLKYDISIFANVG
IKLQGIAFDTMLESYVFNSVATKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQIDLE
IAAPYAAEDADITLRLHQHLWPRLEKEPQLAAVFTDIELPLIQILSDIERGGVLIDGMML
GQQSEELARTIDELEQKAFEIAGEKFNLSSPKQLQALFFEKLGYPIIKKTPKGAPSTAED
VLVELALDYPLPKIILQHRSLAKLKSTYTDKLPLMVNAQSGRIHTSYHQANAATGRLSSS
EPNLQNIPIRTEEGRRIRQAFIAREGKKVLAADYSQIELRIMAHLSQDKGLLTAFAAGKD
IHRATAAEVFDVDFDEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDISRPEAQKYIDTYF
KRYPGVLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTA
ADIIKKAMINIAHWIATETQGEINMIMQVHDELVFEVDSDKAEEMREKVCQLMADAVSLD
VELLAEAGIGDNWEQAH
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaaattgccgaaaatccgttagtgctagtagatggctcctcctacctttatcgt
gcctattattcaccaccacatcttaccaattctaagggtgaagccaccggcgctgtttat
ggcgtaattaacatgttgcgcagccttctaaaacagtatgaaccgactcagatggcggta
attttcgatgcgaaaggtaaaacgttccgtaatgacatgtatgcagattacaaggcccaa
aggccacctatgccagatgatcttcgcactcagatagagcctctgcatagaattatacgt
gctatgggactgcctctagtatgtatttccggagtcgaggccgacgatgttatcggcact
atctcaacccaagcaagtaaagagggtagatccgtgcttatcagcactggcgataaagat
atggcccagctcgtcgatgacaatgtcacgctgatcaacaccatgactaataccatcatg
gggccggacgaagtcaccgaaaaatttggtgtcggacccgaactcattatcgacctatta
gccctacagggagacaaggccgataatattcccgggcttccaggtgtcggcgagaaaacc
gccgtagccatgttaaccggagccggcggcatagataaaattcttgccgctccggagaag
atgccggaacttggcttcagaggcgctaagaccatgcctgccaagcttgccgagcacagg
gatatactcgagttatcctatgcgctggcgacaattaagttagatgttgaactcgaacaa
gactggcaagatctcactatcgagccagcaaacagggatgaattgatcaaatgtttcgct
gaaatggagttcaaacgttggttggccgaagtactcgataataagacgggctcgagtaaa
ggcgaggcagcaaccgatgaagaggtaatcaagcaagatattcaaaccgaatacaccact
atctacacccatgaggaattagatctctggatcgataagctaaccaatgcagaccttatc
gccatagatacagagaccaccagtctcaattatatggaagccaagctagtcggtatctcc
ttctcaatagaagcgggtaaggccgcctaccttccattaggccacgactatctcgatgca
ccagagcaactggatcaagctgaagccttagcaaaactcaagcctttgttggaaaatccc
gaacttaaaaaagtaggccaaaaccttaaatacgacatcagtatttttgccaatgtgggc
attaagctacaaggtatagccttcgatactatgctcgagtcttatgtgttcaactcggtc
gcaactaaacacaacatggatgatctggcacttaaatatctaggtcacaagaatatcagc
ttcgaagagatcgcgggcaaaggtgtcaaacagctcactttcaatcagatcgatctggaa
attgcggctccatacgctgcagaagacgccgacattacccttagattgcaccagcactta
tggccaagattagagaaagagccgcaactggctgcggtatttaccgatattgaactaccc
ctcattcaaatactgtcagatattgagcgtggcggcgtgttaatcgatggcatgatgtta
ggccagcagagtgaagagctcgccaggaccatagatgaattagagcaaaaagccttcgag
atcgccggtgagaaattcaacttaagttcacctaagcagcttcaggcactattttttgaa
aaattgggctatcccattatcaagaagacgcccaagggtgcaccttcgactgccgaagac
gtattagtcgagttagccttagattacccgctacctaagataatactgcaacacagaagc
ttagctaagctgaagagtacctatacggacaagttgcccctcatggtcaatgctcagagt
ggccggatacacacgagttaccatcaggccaacgcggcaaccggacgcctgtcttccagt
gagcctaacctgcaaaacatccctattcgtaccgaagagggccgcagaatacgtcaggcc
ttcattgcgcgagaaggtaagaaggtactcgcagcagattactcacaaatcgaattgcgt
atcatggctcatctgtcccaagataaggggctactcaccgccttcgccgcaggaaaggat
attcatcgggcaaccgcagccgaagtattcgatgtggacttcgatgaagtcaccacggag
caacgccgtcgcgccaaagcggtaaactttggactcatttatggcatgtcggcatttgga
ctcgctaagcagttagatatttctcgccctgaggcgcaaaagtatatcgatacttacttt
aaacgttacccgggtgtactcaaatatatggaagagactcgtgccgaagccgcagatctg
ggttacgtctcgacgctctacggtcgccgactttatctacccgctattaaagatagaaat
gccatgagacgtcaggcagcagagcgcgcggcgattaacgcaccaatgcaaggcacggct
gccgatatcatcaagaaggccatgatcaacatagcccattggattgctaccgagacacag
ggtgagatcaacatgatcatgcaggtacacgatgaactcgtgttcgaggtcgacagcgat
aaggctgaggagatgcgagagaaagtttgtcagctgatggccgatgcggtcagcttggat
gtcgaactgctggctgaagctggaataggtgacaattgggaacaggcacactag
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