Shewanella benthica: SHEWBE_0825
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Entry
SHEWBE_0825 CDS
T06707
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
sbk
Shewanella benthica
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbk03000
]
SHEWBE_0825
Transcription factors [BR:
sbk03000
]
Prokaryotic type
Helix-turn-helix
Other families
SHEWBE_0825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
HTH_8
AAA_5
AAA_3
HTH_30
PAS_4
HTH_22
Mg_chelatase
AAA_2
HTH_7
IclR_C
HTH_28
HTH_23
HTH_29
HTH_17
HTH_50
HTH_5
PAS
Xre-like-HTH
HTH_11
HTH_36
Motif
Other DBs
NCBI-ProteinID:
SQH74802
UniProt:
A0A330LXY2
LinkDB
All DBs
Position
SHEWBE:758742..760532
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AA seq
596 aa
AA seq
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MTLKLGAQQENMQDWLADSWLRSQGAGLTEACLPEEMRLDRGALEQRNYHHKQLIELVEN
HALPLFSQLMSHTSSRLILSDCEGYVLCHWGVSKYSDKLANIALDVGVNWLEQHKGTNAI
GTALKAQQTISVIGEQHFIKQHRFMSCTASPIFSPAGEMIAAIDITTEQQQHTQQTLLLV
SSMAQQVETALLCHLPHSHYRIDLAEQATLLDSGWQGIVIADSEGKILGTNAMAKKLLNA
PGLGEDIKRYIGSQWPQSETISQHGELHLKTQAIKPNKTQVLGHKVAVRFKDPKLERAWQ
QANKVVGKCIPLLVLGETGVGKEQFVTKLHSQSKRCGHAFVAVNCASLPADLVESELFGY
QAGAFTGASRAGYLGKIRQADGGFLFLDEIGEMPLATQSRLLRVLQEREVTPVGSNRSYK
VDIQVVAATNTDLEQLVKDGRFRQDLFYRLNGLQVTLPSLRERSDIERIIDKLHRKYRVS
PQLMEASLLAKLLDYHWPGNLRELDNLMQVVCLMSEGEQELNWGHLPDNLQRTLAQEQAS
TGLVTEPLNNELHTLVNSNIIASYAKFQGNVSQCAKHLGISRNTLYRKLKRLGLKK
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgacactaaaactcggcgctcagcaagagaatatgcaagattggctagcagattcctgg
ttacgcagccaaggtgcagggcttacggaagcctgtcttcctgaggagatgaggctagat
agaggcgcactggaacagcggaattatcatcataaacagcttatcgagctggtagaaaac
catgcgctgccgttgtttagtcaactcatgtcacacacttcgagtcggttaattttgtca
gattgcgagggctatgtactgtgtcattggggagtgagcaagtattcagataagctagcc
aatattgcactggatgtcggggttaattggctggaacagcataaaggcactaatgcgatt
ggcactgcgctaaaggcgcaacaaaccatatctgtcattggtgagcagcactttattaag
cagcatagatttatgagttgcaccgccagcccgatattttctcctgccggtgagatgata
gcggctatagatatcaccacggagcagcagcaacatactcagcaaaccctactattagtg
tccagcatggctcaacaagttgaaacggctttactctgtcatctgccacatagtcactat
cgaatcgacttggccgagcaagctactttgctcgactcgggctggcaaggtatcgtcatc
gccgatagcgaaggtaagatcttaggcactaatgccatggcgaagaaattgttgaatgcg
cccggtttaggtgaggacatcaagcgctatattggtagccagtggccccaaagtgaaacc
atatctcaacatggagagctgcatcttaaaactcaggccataaaacccaataagactcag
gtactaggtcataaagtcgcggtgcgatttaaagatcctaaattagagcgtgcctggcag
caagccaataaggtcgtaggcaagtgcattcccctgctggtattaggtgaaacgggtgtg
gggaaagagcagttcgtgactaagttgcatagccaaagtaaacgttgcggccatgcattc
gttgcggtcaactgcgcctccttacccgcagatttagtcgagtctgagctattcggttat
caagctggggcttttaccggtgccagtagggccggatacttaggcaaaatccgtcaagcc
gatggtggtttcctatttttggatgagataggtgaaatgccattggcgacccaaagtcga
ttattgcgggttttacaggagagggaggttaccccagtcggcagcaaccgcagctacaag
gtggatattcaagtcgtggcggctaccaacacagatctcgaacagttggtgaaagatggt
cgcttcaggcaagatctcttctacaggctcaatggcttgcaggtgaccttgccatcactg
cgggagcgcagtgatattgagcgtatcattgataaactccacagaaaatatcgtgtgtca
ccgcagcttatggaggcatctctattggcaaaactactggactatcactggccgggaaac
ttgcgtgagctggataacttgatgcaggttgtgtgtctgatgtcagagggcgagcaggag
cttaattgggggcacctgccggataacctgcagcgaactctagctcaggagcaagcaagt
accggactggtcacagagcccctaaataatgaattacacactctggttaatagcaatatt
attgccagctatgctaagtttcagggcaatgtcagtcaatgcgccaagcatcttggcatc
agtcgtaatactctttatcgcaagctaaaacggcttgggctaaagaagtga
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