Shewanella benthica: SHEWBE_1000
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Entry
SHEWBE_1000 CDS
T06707
Symbol
hepA
Name
(GenBank) RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
sbk
Shewanella benthica
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbk03021
]
SHEWBE_1000 (hepA)
Transcription machinery [BR:
sbk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
SHEWBE_1000 (hepA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
SQH74969
UniProt:
A0A330LX99
LinkDB
All DBs
Position
SHEWBE:complement(925562..928468)
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AA seq
968 aa
AA seq
DB search
MPFSLGQRWISDTESELGLGTVVGLEDRMVTLMFPATDENRLFSRTEAPLTRVIYNPGDK
IESHEGWSLTVSELEEKNELIIYHGIHTETGEQVSLRETLLNHNVRFNKPQDRLFAGQID
RLDRFGVRYQSQLLRNKLATSDLLGLQGPRVGLIPHQQWIAHEVGRRFAPRVLLADEVGL
GKTIEAGLIIHQQLLTGRAERILVIVPDTLRHQWLVEMLRRFNLKFSVFDEDRCIEAYAD
NDNPFYTEQLVICSLDLLRKKKRLEQAIDADWDLMIVDEAHHLEWTEDAPSRAYRIVEAL
SKVVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYDAFLEEEKSYQDVASAAEALAGG
DALTTQAIAQLTTLLSEKDIGATLELIQASDADVDKQQAARDELLQDLLDRHGTGRVLYR
NSRASVKGFPTRIFHQHPQVMPSQYVTAARVSAMMNGHLDTAARVKQVLSPEKIYQDFES
SSASWWKFDPRVDWLIEFLKTNRNKKVLIIASQAETALSLEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQETGGAQALICSEIGSEGRNFQFASQLVLFDLPLNPDLLEQRIGRLDR
IGQNNDVEIHLPYLAGTAQEYLMQWYHQGLNAFEQTCPSGHILFSELSESLLSLLITPDE
TAQQELLSNTQARYQELKTVMEQGRDKLLEINSHGGERAAKLVQRLAERDQDTQLIGSVI
RLWDIIGVEQEDCGENTIVLKTSEHMMFPTYPGLSEDGMTITFDREVALSRDDIALITQE
HPLVQTGLDLITSSETGTTSVAVLKNKALPAGTIFLELIYMADASAPKSSQLYRYLPPTP
VRILLDKNGNNLSDKVSYESFNKQLSAVNRHIASKLVNASQTVLHPLFAKGEEFAQVELK
LLVESARAKMTSQLTLELERLEALKAVNPNIRDEELTHLKDQMNELNAYLDDSLLQLDAV
RLVLVSHA
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttccttaggtcaacgctggataagtgataccgaatcagaacttggtttaggt
acagtcgtaggattagaagaccgtatggtcacactaatgtttccagcaaccgatgagaac
aggctgttctcacgcaccgaggctcccctgactcgagttatttataatcctggcgataaa
attgaaagccatgaaggctggagcctgaccgtcagtgagctcgaagagaaaaatgagctc
attatctaccacggaattcacaccgaaacgggtgagcaggtctccctcagagaaaccctg
ctcaaccacaatgttagattcaataagcctcaagataggctattcgccggtcagatcgat
cgcttagacagattcggcgtccgctaccagagccaattattgcgaaataagttggccaca
tcggatctgctgggattacagggacccagagtcggcctgatcccacatcagcagtggatt
gcccatgaagtgggtcgccgttttgcccctagggtattactcgccgatgaagttggcctg
ggcaagaccatcgaagcgggactgatcattcatcagcagctgcttaccgggcgcgccgaa
cgaattctggttatcgttcccgataccctgcgtcatcagtggttggtcgagatgctgcgc
cgcttcaatcttaaattctctgtattcgatgaagacagatgtatcgaagcttacgccgat
aacgacaatccattttataccgaacaactggtgatctgctcactggatctattgcgcaag
aagaagcgtctggaacaagccatagatgccgattgggatcttatgattgtcgatgaagca
catcacctggagtggaccgaagacgcacctagccgcgcttaccgtatcgttgaggccctg
agtaaagtcgtaccaggcgtattattgctgaccgcgacgccggatcagctgggtcatcag
agtcattttgccagattgcgcttactcgatcccgatcgtttctacgattatgacgccttc
ctcgaagaagaaaaaagctaccaggatgttgccagtgccgccgaagcgctcgccggtggt
gacgcactcacgacccaggctatagctcagctgacgaccctgctcagtgagaaagatatc
ggcgcgactctggagttaattcaggcaagcgacgccgatgtcgacaagcaacaagccgcc
cgtgatgaactgttacaagatctgctggacagacatggcacaggccgggtgctctaccgt
aacagccgagcatcggtcaaaggctttcctacacgaattttccatcagcacccacaagtg
atgccaagccaatatgtgacggccgcacgagtcagtgccatgatgaatggccacctagat
actgccgctagggtcaaacaggtcctgagcccggagaagatctatcaggacttcgagagc
agcagtgccagttggtggaaatttgatccccgagtcgattggctcatcgaatttttaaag
accaaccgcaacaagaaggtgctgattattgccagccaggcggaaacagccctgagtctg
gaggaagctctgcgtacccgtgaaggcatccaggcgaccgtgttccatgaaggcatgtcg
attatcgagcgcgataaggccggcgcctactttgctcaggaaaccggtggcgctcaggca
ctcatctgcagcgagattggctctgagggtcgaaatttccagtttgccagccagctagtc
ctgtttgatctgcctctgaatccggatttactggagcaacgcataggccgtttagatcgt
atcggtcaaaataacgatgtcgagatccacttgccctacttggcaggcacggcccaagag
tatctgatgcagtggtaccatcaggggctcaatgctttcgagcagacctgtcccagtggc
catatactcttcagcgaactttctgagtctctgctgtcactgttgatcacaccagatgag
acagcacagcaggagttgctaagcaatactcaggctcgttaccaagagctgaagaccgtc
atggaacaaggccgggataagttgcttgagatcaactctcatggtggcgagcgcgcagct
aagttagtacaacgcctggcagaacgagatcaagacacacaactcataggttcggttatc
cgtttatgggacatcataggtgtcgagcaggaagactgtggtgaaaacaccatagtgctc
aagaccagtgaacatatgatgttcccgacctaccctggattatctgaagacggcatgacg
atcaccttcgatagagaagtggccctgtcccgtgatgatattgcccttatcactcaggag
catcctctggttcagacaggtttagacctgatcacctcatcagagacggggaccaccagc
gtagccgtattgaagaataaggcactccctgcgggtaccatcttcctcgagctgatctac
atggccgatgcttcggcacctaaatcgagccagctatatagatacctgccgccaacacct
gtgcgtatcttactggacaagaatggtaacaacttgtctgacaaggtcagctacgagagt
tttaataagcagctcagtgcggtcaaccgacacatagccagtaagctggtcaatgcctct
cagacagttttacatcccttatttgctaagggagaagagtttgcacaggttgagcttaaa
ctgctggtagagagtgccagagcaaagatgacatcccagctcacactggagctcgagcgt
ctcgaagcgctcaaggcggtgaaccctaacattcgtgacgaagagttaacccatcttaag
gatcagatgaacgaactcaatgcttacttagatgatagcctgctgcaactcgatgccgtg
cgtctggtgctagtgagccacgcttaa
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