Shewanella benthica: SHEWBE_1071
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Entry
SHEWBE_1071 CDS
T06707
Symbol
yhbJ
Name
(GenBank) hypothetical protein; putative nucleoside triphosphate hydrolase domain
KO
K06958
RNase adapter protein RapZ
Organism
sbk
Shewanella benthica
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbk03019
]
SHEWBE_1071 (yhbJ)
Messenger RNA biogenesis [BR:
sbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SHEWBE_1071 (yhbJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PapZ_C
RapZ-like_N
AAA_16
AAA_18
Integrase_1
AAA_22
CoaE
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
SQH75040
UniProt:
A0A330M1V2
LinkDB
All DBs
Position
SHEWBE:complement(991891..992739)
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AA seq
282 aa
AA seq
DB search
MKLVMVSGRSGSGKSVVLRVLEDLGYYCVDNLPLPLMDTLLEQLKGSTDLVAISVDVRNM
PEQDIELEKQFANLPEGTELLSFFLNSSDEVLLKRYSETRRLHPLSRTKSSLKEAIEHER
ELLEPVSKMVDHYIDTSNLNIYDLSDKIREILLGTIDKELVINFESFGFKYGMPAEADFM
FDVRFLPNPHWEPELRPLTGLDEPVQLFLSQQPIVNKFIWQIENLLATWLPHLERNNRSY
LTIAIGCTGGQHRSVYVTEQLAKLFSNSKHKIQARHRELSND
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgaaactggtgatggtatccggtcgttccggttcgggaaagtctgtcgtactcagggtc
ttagaagatcttggctactactgtgtcgataaccttcctctgccgctaatggataccttg
ctcgaacaactcaagggcagtacagatctcgttgccattagtgtcgacgtgcgtaatatg
ccagagcaagatatagagctggagaagcaatttgctaacctccccgagggcacagagtta
ctcagttttttcttgaactcgagcgatgaagtactgctgaaacgttatagtgaaacccga
agattacacccactatcccgcactaaatcatctcttaaagaggcgatagagcatgaaaga
gaactgctcgaacccgtatctaagatggtcgatcattacatagacacatccaacctcaac
atctacgacctgagtgacaagatccgtgaaattctcttgggcactatcgataaagagctg
gtgattaacttcgaatcttttggcttcaagtatgggatgccagccgaggcagacttcatg
tttgacgttcgtttcttgccaaacccccattgggaacctgagctaagacccttgacaggg
cttgatgagcccgtgcaactgtttttaagccaacaacccatagtcaataaatttatctgg
caaatagaaaacttactggcaacctggttacctcatcttgaaagaaacaaccgtagttac
cttactatcgccataggttgtactggcggacaacatagatctgtttatgtcaccgagcaa
ttagctaagttattcagtaacagtaagcataagattcaggcacgtcatcgcgaattgagc
aatgactaa
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