Shewanella benthica: SHEWBE_1216
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Entry
SHEWBE_1216 CDS
T06707
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sbk
Shewanella benthica
Pathway
sbk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHEWBE_1216 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbk03019
]
SHEWBE_1216 (rhlE)
Enzymes [BR:
sbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SHEWBE_1216 (rhlE)
Messenger RNA biogenesis [BR:
sbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SHEWBE_1216 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
DUF3110
ERCC3_RAD25_C
Rubella_Capsid
HI1480
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
SQH75182
UniProt:
A0A330LYX5
LinkDB
All DBs
Position
SHEWBE:complement(1114960..1116399)
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AA seq
479 aa
AA seq
DB search
MSFTSLGLSAPILKAVANKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL
ELLSRGNRAQAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAVVFGGVGIGPQISKL
SKGVDILVATPGRLLDLYNQGAVNFNQLEVLVLDEADRMLDMGFIHDIKKILRALPAKRQ
NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATAKSVEQYIYMVDQKQKTAALIHLIKQ
NDWQQVLVFSRTKHGANRIAKNLEAKDITAAAIHGNKSQGARTKALANFKSGGVRVLVAT
DIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSADESKLLRDIER
LIKQNIPRKEVEGFVPTQVVAETDLNDRKHGQNRGPRNANGRGNGRNGNSSSRSRDSRSS
QGKVEHKDGQRSGEAARGHQPNDSNASHSRRRSGSQTRPSNSASSGASKPADSSIWGKK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctgggtttatccgctccgattttaaaagccgtagccaataaaggc
tatgagacaccttcgccaattcaagctcaagcgatccccgcagtgctcgaaggcaaggat
gtaatggcagcagcccagactggcacaggtaaaaccgcaggcttcactctacctctatta
gagctgttaagcagaggcaatcgtgctcaagctaaaaaagtacgcgccctggtattaaca
ccgactcgagagcttgcagctcaagtcgccgagagtgtcgatacttatggaaagtacctg
ccacttaaatccgcagtagttttcggtggtgtaggcataggtccacaaatttctaagctg
agtaaaggcgttgacatattagtcgccacacccggtcgtttactggacctatataaccaa
ggagcggtgaacttcaaccaacttgaagtgctggtcctcgatgaagccgatcgcatgtta
gatatgggcttcattcatgacatcaaaaaaattcttagagcattgccggctaaacgtcag
aacctgatgttctcggcgaccttctccgacgatattcgtaagctggctaaaggcttggtg
aacaatccagtcgagatctctgttaccccacgtaacgccacggcgaaatccgttgagcaa
tatatctatatggtcgatcagaagcagaagactgcggcgctgatccatctgatcaagcaa
aatgactggcaacaggtattagtctttagccgcactaagcatggcgcaaaccgtatcgcc
aagaatctcgaagctaaagatatcactgccgccgctatccatggcaataagagccaaggc
gcacgcacaaaggcgctggcgaacttcaagagtggtggcgttcgcgtattagtcgcaacc
gacatcgcagctcgtggtatcgatattgaccaactgcctaacgtggttaacttcgacctg
ccgaatgtacctgaggattatgttcatcgtatcggccgtaccggtcgcgccggtgccagt
ggtcaagcagtctcactagtcagtgctgacgagagcaagcttctcagggacattgaacgt
ttaattaagcaaaatattccacgcaaagaagtggaaggttttgtgcctactcaagttgta
gccgaaaccgatctcaatgacagaaaacatggtcaaaatcgtggtccacgcaatgccaat
ggccgcggtaatggtcgtaacggcaactcgagttcgcgttctcgcgactcacgcagcagt
caaggcaaggtcgagcataaagacggtcaacgcagtggtgaagccgctcgcggtcatcag
ccaaatgatagtaatgccagtcacagtcgccgtagatctggctctcaaacccgccctagc
aatagcgcgagttctggcgcttctaaacctgcagacagcagcatttggggcaaaaagtaa
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