Shewanella benthica: SHEWBE_1258
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Entry
SHEWBE_1258 CDS
T06707
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sbk
Shewanella benthica
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbk03016
]
SHEWBE_1258
Enzymes [BR:
sbk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SHEWBE_1258
Transfer RNA biogenesis [BR:
sbk03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SHEWBE_1258
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
SQH75224
UniProt:
A0A330M0W6
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All DBs
Position
SHEWBE:complement(1157310..1157918)
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AA seq
202 aa
AA seq
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MQRLFLGVSPTKQQINQLSDIQSLLGKAGHKGYGRPVNRYNFHMTLAFLGQTDDASLAQL
INAIDAMACTDSWTKFSITLDKFTLWRKPQVLCLSAPSLTQVSLNPELYSAVEHCQQIID
STQSKSPPPPSTENGAEPLIKPHLHFTPHITLLRKAKLLPKQTLMQMGLASITLTPNQMH
LYQSVSGERGVEYHILHSWPLV
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgactatttttaggcgtctcaccaacaaagcagcaaattaatcagctcagcgat
attcagtctttgctgggtaaggcaggtcacaaaggctatggtcgcccggtcaatcgatac
aatttccatatgaccctcgcctttctcggccaaaccgatgatgcctctcttgctcagtta
attaacgctatcgatgcaatggcttgcaccgatagctggacaaaatttagcatcacctta
gacaagttcaccctatggcgtaaacctcaggtgctgtgtttatccgcgccttccttgact
caggtatcactcaatcctgagttgtactccgccgtggagcattgtcagcagattattgat
tcgacacagtcaaaatcgccaccgcccccttcgacggagaatggcgccgagccgctaatt
aaaccccatctacatttcactccccacatcaccttgctcaggaaagccaagttgttgccc
aagcaaactctgatgcaaatgggtttagcttcgatcacactaacgccaaatcagatgcac
ttatatcaatcagtcagtggcgaacgtggtgtcgaataccatattttacattcctggcca
ctcgtctaa
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