Shewanella benthica: SHEWBE_1346
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Entry
SHEWBE_1346 CDS
T06707
Symbol
ung
Name
(GenBank) uracil-DNA-glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sbk
Shewanella benthica
Pathway
sbk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SHEWBE_1346 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbk03400
]
SHEWBE_1346 (ung)
Enzymes [BR:
sbk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
SHEWBE_1346 (ung)
DNA repair and recombination proteins [BR:
sbk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SHEWBE_1346 (ung)
Prokaryotic type
SHEWBE_1346 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
SQH75312
UniProt:
A0A330LZ99
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All DBs
Position
SHEWBE:1254489..1255157
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AA seq
222 aa
AA seq
DB search
MTVHSNWNTFIEAEKRLDYYQKLQQFIQGERNTGKAIFPPQQEVFTAFEKTPLDKVRVVI
IGQDPYHGPNQAHGLCFSVKHGVKTPPSLVNMYKELLTDIAGFQTPDHGHLSSWAEQGVL
MLNTVLTVEQGKAHSHAKSGWETFTAHVLKQLNEQETPMVFILWGAHAIKKGKVITSEHH
HILSGPHPSPLSAYRGFFGCQHFSKTNALLASLGTKPIDWQV
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgactgtacactccaattggaacacctttattgaagccgagaagcgcttagactattac
caaaaacttcaacaatttattcagggtgagcgcaatactggtaaggcgatatttccccct
cagcaagaggtgttcaccgcgttcgagaagacacctttagacaaggtcagagtggtgatt
attgggcaagacccttaccacggaccgaatcaagcccacggcctgtgtttttcggttaag
catggtgtgaaaacaccgccttctctggtgaacatgtataaggaattgctgactgatatt
gctggttttcaaacacccgatcatgggcatctctccagttgggcggaacaaggagtattg
atgctcaacacagtattgactgtcgaacagggtaaggcgcactcccatgctaaatcgggt
tgggaaacctttaccgcccatgtactcaagcagctaaacgagcaagaaacgcctatggta
tttatcctctggggagcgcatgcgatcaagaagggtaaggtgatcacatccgagcatcac
catattctatcaggcccacatccctcaccactatccgcataccgtggcttcttcggctgc
caacatttctccaagaccaatgcgctgctagcatcactcggcaccaagccgatcgattgg
caggtatag
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