Shewanella benthica: SHEWBE_1361
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Entry
SHEWBE_1361 CDS
T06707
Symbol
gcvP
Name
(GenBank) glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
sbk
Shewanella benthica
Pathway
sbk00260
Glycine, serine and threonine metabolism
sbk00630
Glyoxylate and dicarboxylate metabolism
sbk00670
One carbon pool by folate
sbk00785
Lipoic acid metabolism
sbk01100
Metabolic pathways
sbk01110
Biosynthesis of secondary metabolites
sbk01200
Carbon metabolism
Module
sbk_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
SHEWBE_1361 (gcvP)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
SHEWBE_1361 (gcvP)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
SHEWBE_1361 (gcvP)
00670 One carbon pool by folate
SHEWBE_1361 (gcvP)
Enzymes [BR:
sbk01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
SHEWBE_1361 (gcvP)
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Gene cluster
GFIT
Motif
Pfam:
GDC-P
GcvP2_C
Beta_elim_lyase
Aminotran_5
Motif
Other DBs
NCBI-ProteinID:
SQH75327
UniProt:
A0A330M6D8
LinkDB
All DBs
Position
SHEWBE:1269763..1272651
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AA seq
962 aa
AA seq
DB search
MTTETLTKLEQHDLFLSRHIGPDSAQQQEMLNYVGAESLADLTAQIVPESIRLNRDLAIG
DHVSEAEGMAYIRAIADKNKVYKSYIGMGYYGTEVPTVIQRNVLENPGWYTAYTPYQPEI
AQGRLEAILNFQQLSMDLTGLDLASSSLLDEATAAAEAMALAKRVSKAKKANIFFVADDV
FPQTLDVIKTRAECFGFDIIVGPAADAANHDIFGALFQYTNRYGQITDFTELFTKLHEKK
AVVAVAADIMSLVMLKSPGSMGADVVLGNSQRFGVPMGFGGPHAAFFVTRDAYKRSLPGR
IIGVSQDTRGNRALRMAMQTREQHIRREKANSNICTAQVLLANMASFYAVFHGPQGLKTI
AERIHRLTDILSSGLTAKGVTLVNNTWFDTLSIKGLDVAAIKTRSEAQGVNLRIDSDGIL
GVSLAETTTGEDVAQLFDILLGEGHGLDVATLDSDILANGSTSVPAALIRTDAILTHPTF
NRYHSETEMMRYIKRLENKDLALNHSMISLGSCTMKLNAATEMMPITWPEFANMHPFCPP
DQAQGYAQLVSELSDWLVEITGYDAVSLQPNSGAQGEYAGLLAIKQYHESRGDAHRNICL
IPQSAHGTNPASAQLAGMKIVVTACDKDGNIDMEDLKAKAAEVAANLSCIMVTYPSTHGV
YEETIGEICEVIHQYGGQVYLDGANMNAQVGLTSPGSIGADVSHLNLHKTFAIPHGGGGP
GMGPIGVKKHLAPFLSGHTVVKQGLESDNNGAVSAAPYGSAGILPITWMYIKLLGKQGLR
QSTQVALLNANYVMKKLSEHYPVLYTGRNDRVAHECIIDLRPLKEASGVTEMDIAKRLND
YGFHAPTMSFPVAGTLMIEPTESESKVELDRFIEAMISIRGEVARVESGEWPVDNNPLSN
APHTLADIMDCEFDSRPYSREMAVFPTAAVKLNKFWPTVNRIDDVFGDRNLFCACVPIAD
YE
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgaaacgcttactaagcttgagcagcacgatctcttcctcagccgtcatatt
ggcccagatagcgcacagcagcaagagatgctgaattatgtcggtgcagaatctttagca
gatctcaccgcgcagatagtgcctgagtcgattcgtcttaatcgtgacttagccattggc
gatcacgtcagcgaagccgaaggcatggcctatatccgcgctatcgccgataagaacaag
gtctataagagctacataggcatgggttactatggtaccgaggttcctactgttatccag
cgtaacgtgctcgaaaatccaggttggtacacggcctacacgccataccagccagagatc
gctcagggtcgtttagaagccatccttaacttccagcagctgtctatggaccttaccggc
ctggacttagcgtcttcatcgctactggatgaagccacggcagcggccgaagccatggca
ttggccaagcgtgtatcgaaagccaagaaagccaacatcttcttcgttgccgatgacgtg
ttcccgcagacgctggatgttatcaagacccgcgccgagtgtttcggtttcgatattatc
gtgggcccggcagccgatgccgctaaccatgacatcttcggtgccctgttccagtacacc
aaccgttatggtcaaatcacagatttcaccgagctattcaccaagttacatgagaagaag
gccgtggttgctgttgccgccgacatcatgtctctggtgatgcttaaatcgcctggctcc
atgggcgccgacgtcgtactgggtaactcacagcgcttcggtgtccctatgggattcggt
ggtccacacgccgccttcttcgtcacccgtgacgcatacaagcgttcactgcctggccgt
attatcggtgtatcacaagatactcgcggtaaccgcgccctacgtatggcgatgcagact
cgtgagcaacatatccgccgcgaaaaagcgaactcaaacatctgtaccgctcaggtatta
ctcgcgaacatggcgtctttctacgccgtattccacggcccacaaggtcttaagactatc
gccgagcgtattcatcgtctgaccgatattcttagttctggcctaactgccaagggcgta
actctggtcaacaatacctggttcgatacattatcgatcaaaggcttagacgttgcggct
atcaagactcgctctgaagcccaaggcgttaacctgcgcatagactcggatggcatttta
ggtgtcagcttggccgagaccaccactggtgaagatgtggctcagctgttcgacatccta
cttggcgaaggtcatggtctggatgttgccacgctcgatagcgacatccttgccaatggc
agcacatcggtgccagcagcgttaatccgaacagatgcgatactgactcacccgacgttc
aatcgctatcacagcgaaaccgagatgatgcgttacatcaagcgtctcgagaacaaggat
ctcgcccttaaccactcaatgatctcattgggctcatgtaccatgaagctgaacgcagcc
accgagatgatgcctatcacttggcctgagttcgctaacatgcacccattctgtccacca
gatcaggcgcaaggttacgcacaacttgtcagtgagctttctgactggttagtggagatc
accggttacgacgccgtatcactacagcctaactcaggtgcacagggagaatacgccggt
ctgctggcgattaagcagtaccatgagtctcgcggtgatgcacacagaaacatctgtcta
attcctcaatctgcccacgggactaatccggcttctgctcagcttgcgggcatgaaaatc
gtggttaccgcctgtgataaagacggcaacatagacatggaagacctcaaggcgaaagcg
gcagaagttgctgctaacctgtcttgtatcatggtcacctacccatcgactcacggcgtg
tatgaagagacgattggcgagatctgtgaagtgattcatcaatacggcggtcaggtttac
ctcgatggtgccaacatgaacgctcaggtaggtctaacatcgccgggttcaatcggtgcc
gacgtgtctcaccttaacctgcacaagaccttcgctatcccacacggtggcggcggaccg
ggtatggggccaatcggtgttaagaaacacctggcgccattcctgtctggccacacagtg
gttaagcagggtctagagtctgataacaacggcgcagtatctgcggcgccatacggtagt
gcaggaatcttgcctatcacttggatgtacatcaagttactcggcaaacaaggcctgaga
caatcgactcaggtggcactgcttaacgctaactacgtgatgaaaaagctgtctgagcat
tatcctgtgctttacaccggtcgtaacgaccgcgtggctcacgagtgcatcatagatttg
cgtccgcttaaagaggcgtctggcgtcactgagatggatatcgccaagcgtcttaacgat
tacggtttccacgcgccaaccatgagcttcccggttgcgggaactttaatgattgagcca
actgaatctgagtctaaggttgagctggatagattcatcgaagcgatgatctctattcgc
ggcgaagtggctcgcgtcgagtctggcgagtggccggtagacaacaacccgctgagcaac
gctccgcatacattggctgacatcatggactgcgagtttgactcacgtccatacagccgt
gaaatggccgtgttcccgacggcagcagtgaagctaaacaagttctggcctacggttaac
cgtatcgatgacgtgtttggagaccgcaatcttttttgtgcttgtgtcccaatcgctgac
tacgaataa
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