Shewanella benthica: SHEWBE_1565
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Entry
SHEWBE_1565 CDS
T06707
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
sbk
Shewanella benthica
Pathway
sbk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SHEWBE_1565 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbk03021
]
SHEWBE_1565 (rpoD)
Transcription machinery [BR:
sbk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SHEWBE_1565 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
DUF3391
Motif
Other DBs
NCBI-ProteinID:
SQH75531
UniProt:
A0A330M045
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All DBs
Position
SHEWBE:complement(1445188..1447017)
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AA seq
609 aa
AA seq
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MEHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDADQIEDIVQMINDMGIRVYEQAP
DADEIMMSEDSTDDDAAEEAAAALATVEAELGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINTVQASVAEYPQAIAAILDQFDRYEAEEVRLSDIISGFIDPNADDIAPTATHV
GSDLSQNELDKDDSKDDEDEEEEGPKGPDPEESKQRFTQLREVHENTLRIIADKGRGHPE
ATVALFEIGELFKEFRLMPKQFDRLVKGMRATMDKVRVQERLIMKLCVEQAKMPKKNFVK
CYTADESSIAWFDAELASKKPYVAGLQMVETDVRRCRFKLDIIEKETGLAIASIKDINRR
MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELA
ERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATGESLRNAT
HEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS
EILKSFLDE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggagcacactcctcagtcgcaacttaaactgttgctagctaaaggtaaagagcaaggc
tacttaacctatgcagaagtgaatgatcacttgcctgctgatatggtcgatgcagaccag
atcgaagatattgtccagatgattaatgacatgggtattcgcgtctacgaacaggcgccg
gatgctgatgaaatcatgatgtcagaagacagcacagatgatgatgctgcagaagaagct
gccgctgcacttgcaacggtagaggccgagcttggtcgtacaacagatcctgtccgcatg
tatatgcgtgaaatgggcactgttgaacttcttacccgtgaaggcgagattgttatcgct
aaacgtatcgaagaaggaatcaacacggttcaagcatcggtcgccgagtatccgcaagcg
attgccgcgatcctagatcagttcgatcgctatgaagccgaggaagttcgtctatccgat
atcatctcaggttttatcgacccgaatgccgatgatattgccccaacggccactcacgtt
ggttcagacttatcccaaaatgagctcgacaaagatgactcgaaggatgatgaagatgaa
gaagaggaaggtccaaaaggaccggatcctgaagaatctaaacagcgcttcactcagcta
agagaagtacatgagaatacgctgaggatcatcgcagacaagggtcgtggccatcctgaa
gcaaccgtagccctatttgaaatcggtgaattatttaaagaattccgtcttatgcctaag
cagttcgatcgcttagtcaagggcatgcgtgccaccatggataaggtccgtgttcaagaa
cgtttgatcatgaagctctgtgttgagcaagctaaaatgcctaagaagaacttcgttaag
tgttataccgccgacgaaagcagcatagcctggtttgacgccgaactcgcctctaagaaa
ccttatgttgcaggtttacagatggtcgagactgacgttcgtcgttgtcgcttcaagctc
gatattatcgagaaagaaaccggactcgcgattgcgtctatcaaggatatcaaccgtcgt
atgtcgatcggtgaagctaaggctcgccgcgctaagaaagagatggtagaagctaactta
cgtctggttatctctattgcgaaaaaatacaccaaccgtggtctgcagttcctggatctt
attcaggaaggtaacataggcctgatgaaggcggttgataagttcgaatatcgtcgtggt
tacaagttctcaacctacgcaacttggtggatccgccaggcgatcactcgctctattgcc
gatcaggcaagaacgatccgtatcccggtgcatatgattgagacaatcaacaagctgaac
cgtatttctcgtcagatgctacaggaaatgggccgcgagccgactcctgaagagctggct
gagcgtatgatgatgcctgaagataagatccgtaaggtacttaagattgccaaagagcct
atctcaatggaaacacctatcggtgatgacgaagattcgcacttaggtgatttcatcgag
gataccactctcgagttacctttggactcggccacgggcgagagcctgagaaacgcgact
cacgaagtattagcaggcctaacggcccgtgaagctaaggtgttgcgtatgcgtttcggt
atcgacatgaacactgaccataccctcgaagaggttggtaagcagttcgatgtgacccgt
gagcgtattcgtcagattgaagctaaggcgctgcgtaagctacgtcacccttctcgctct
gagatcctcaagtctttccttgacgagtaa
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