Shewanella benthica: SHEWBE_1576
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Entry
SHEWBE_1576 CDS
T06707
Symbol
ycfS
Name
(GenBank) putative L,D-transpeptidase YcfS
KO
K19236
L,D-transpeptidase YcfS
Organism
sbk
Shewanella benthica
Pathway
sbk01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01503 Cationic antimicrobial peptide (CAMP) resistance
SHEWBE_1576 (ycfS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sbk01002
]
SHEWBE_1576 (ycfS)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sbk01011
]
SHEWBE_1576 (ycfS)
Peptidases and inhibitors [BR:
sbk01002
]
Cysteine peptidases
Family C82
SHEWBE_1576 (ycfS)
Peptidoglycan biosynthesis and degradation proteins [BR:
sbk01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
SHEWBE_1576 (ycfS)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Ldt_C
LysM
Motif
Other DBs
NCBI-ProteinID:
SQH75542
UniProt:
A0A330LZW8
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All DBs
Position
SHEWBE:1454910..1455812
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AA seq
300 aa
AA seq
DB search
MMRILLLFILSVIPGMSMANVYDLPENGSRLIGELQEHLVQKGDYFQTISKQYNVGILEL
MESNPGVDLFLPTPGSTLIIPTQMLLPDVPRKGIVLNLAELRLYYFPKNGKQVHVFPVGI
GRIGRETPEMVTKIKARIPNPSWTPPASIRKEYLERGEVLPAIVPAGPDNPLGNYAMQLS
YGDGSYLIHGTNKDFGIGMRVSSGCVRLNPDDIEWLFNQTQYGDPVRVINQTVKISTEPD
GRHIIEVHSALSKSELEMQQEKVVTMSANIVKFISQDDIDSFKANDALLTQNGLPVNITL
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgatgagaatattgctgttgttcatcttaagtgtaattccaggcatgagtatggccaac
gtgtatgatctgccggaaaatggcagtcgtcttatcggtgagcttcaggagcatctggta
cagaagggggattattttcagacaatttccaagcagtacaatgtcggtattctggagctg
atggagtcaaatccaggcgtggacctatttttacccaccccaggttctacactcatcata
ccgacgcagatgttgctacccgatgtgccaagaaaagggatagtgctcaacctagcggaa
ttgcgactctactactttcctaaaaatggtaagcaagtccatgtctttcccgtcgggata
ggtcgcataggccgtgaaaccccagagatggtcaccaaaattaaggccagaattcctaac
ccgagttggacgcctccggccagtatccgtaaggagtatctggagcgtggcgaggttcta
ccagccatagtaccagccggaccggataaccccttgggtaattatgccatgcagctgtct
tatggtgatggcagttacctgatccacggcactaacaaagattttggtatcggcatgcgc
gtcagctcaggttgcgtgcgtcttaatcccgatgatatcgagtggctatttaatcagacc
cagtatggcgatcctgtgcgggtgatcaaccagacagtcaagatctctaccgagcccgat
gggcgccacatcatagaagtgcattctgccctgtctaaatctgagctagagatgcagcaa
gagaaagtcgtgaccatgagcgctaacatcgtcaagttcatcagccaggacgatatagac
agttttaaggctaacgatgcgctactgactcagaatggtttacctgtgaatataacgctt
tag
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