KEGG   Shewanella benthica: SHEWBE_2117
Entry
SHEWBE_2117       CDS       T06707                                 
Symbol
hupB
Name
(GenBank) DNA-binding protein HU-beta
  KO
K03530  DNA-binding protein HU-beta
Organism
sbk  Shewanella benthica
Brite
KEGG Orthology (KO) [BR:sbk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sbk03032]
    SHEWBE_2117 (hupB)
   03036 Chromosome and associated proteins [BR:sbk03036]
    SHEWBE_2117 (hupB)
   03400 DNA repair and recombination proteins [BR:sbk03400]
    SHEWBE_2117 (hupB)
DNA replication proteins [BR:sbk03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    SHEWBE_2117 (hupB)
Chromosome and associated proteins [BR:sbk03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    SHEWBE_2117 (hupB)
DNA repair and recombination proteins [BR:sbk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      SHEWBE_2117 (hupB)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2
Other DBs
NCBI-ProteinID: SQH76083
UniProt: A0A330M3S2
LinkDB
Position
SHEWBE:1980530..1980802
AA seq 90 aa
MNKSELIEKIATGADISKAAAGRALDSFIGAVTDGLKNGDKISLVGFGTFEVRQRAERTG
RNPQTGAEIKIAAANIPAFKAGKALKDAVN
NT seq 273 nt   +upstreamnt  +downstreamnt
atgaacaaatctgaactaatcgagaaaatcgctactggtgctgacatttctaaagcggct
gctggccgtgcattagattctttcatcggcgcagtcactgacggccttaaaaatggcgat
aagatttctcttgttggttttggtacttttgaagtgcgtcaacgtgctgagcgtactggt
cgcaacccacagacgggtgcagagattaagattgctgcagcaaatattcctgctttcaaa
gcaggtaaagctctgaaagacgctgtgaactaa

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