Shewanella benthica: SHEWBE_2175
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Entry
SHEWBE_2175 CDS
T06707
Name
(GenBank) putative Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
sbk
Shewanella benthica
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbk03400
]
SHEWBE_2175
DNA repair and recombination proteins [BR:
sbk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SHEWBE_2175
Archaeal homologous recombinant proteins
SHEWBE_2175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_29
SMC_N
ABC_ATPase
AAA_21
NACHT
nSTAND3
HWE_HK
GTP_EFTU
AAA_16
cobW
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
SQH76141
UniProt:
A0A330M1U8
LinkDB
All DBs
Position
SHEWBE:2033891..2036947
Genome browser
AA seq
1018 aa
AA seq
DB search
MRPLKLVMSAFGPFASTEETDFAALGTNPLFLINGPTGAGKTTLLDAICFALYGKTTGDE
REGSQMRCDLAVDSLLTEVTFSFALGDIQYRIRRVPEQQRVKKSGDGYTVQKPEAQLYRI
DSDGSEHLLVASKVSEATAEIEQLTGLDADQFRQVMVLPQGKFRELLMADSKDREKIFSQ
LFQTQIYRKIEDKLKFQASAIKAEVRDHRNRRDGILHNIKLESDEGLNAELVEFSPKLTQ
AVESKEKASLAFIDANKQFESAKLLVNAFDAQDKLKQAAEHLSEQKEAIGQRQFSLENGQ
KAQQLKPVLDVSQARETELTHAQSGVTQAQAAKQRSEQALALSQSKFDSLSELEQQLQLA
QNEEQKLSQLVPQLQGLDSLQKALSLATNERDQAKNKGIEGQVTLAGVKEQRQAGEQHIP
LLEQTANEQVNAQQALTAQSELIERYQQWQVASHHADNTEQALKQAEAKGKQLRCDAKDK
GEAYDQLQLLWHRGQASILAQKLNPGEPCPVCGSDVHPMPAYSEHTLPTEDELESSKQAC
EAAKGALNQAIADYKGLKAQLQEQVKLKNEHQQRLGEWASLPLDSLQSLLKKMQLQVNQA
NVAAQELSQLRQQIQNWQSKERDLQTQLDAEREIFHELQNRVASAQGQSDQACIAIPEQY
RSIDALNSAINQAQNHLTGLQQAINTIRQSHTQALEQDAAQSAALAGAESNLTQAREQSN
KAQAELNAELGKSGFSDKQALTQALLSTEALKDIADEIAKYQQDCIANQTTLTQVSDKLD
GQVKPLLTDAEALVATSQTEQREAEQSWQVLQSRVSQLTQTQKLLQEADADAKKLEDEYA
IIGTLSQVANGQTGNKISLQRFVLSVLLDDVLLEASHRLQMMSKGRYRLIRKEERAKGNK
ASGLDLEVEDAYTSKVRPVATLSGGESFMAALSMALGLSEVVQAYAGGIKLDTLFIDEGF
GSLDQDSLDLAIRTLMDLQSSGRMIGVISHVSEMKEQIGTRIDIIKTAQGSKTVIVLP
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgagaccattaaaactggtgatgtcggcctttggccccttcgcatcgaccgaagaaacc
gattttgcggcgctgggcaccaatccattatttttgatcaacggaccgactggcgcgggt
aaaaccacgcttttggatgccatctgtttcgccctatacggtaagacgaccggtgatgag
cgtgaaggcagtcagatgcgctgcgacttagccgtcgacagtctactcactgaggtgacc
tttagttttgccctgggtgatattcaataccgtatccgccgggtgcccgagcagcaacgc
gtcaagaaaagtggtgatggttacacggtgcagaaacctgaggctcagttgtatcgtatc
gatagtgacggtagcgagcatctgctggtggcgagtaaggtctctgaggctactgctgaa
attgaacaactcacaggtctggatgccgatcagttccgtcaggtgatggtcttgccccag
ggtaagttccgcgaactgctgatggcagactcgaaagacagagagaagatattcagccag
ctgtttcagacgcaaatttatcgcaagattgaagataaactcaagtttcaggcttctgca
attaaagccgaggttcgggatcaccgcaacagacgcgatgggatcttacacaatatcaag
cttgagtcagatgaagggttaaacgctgagcttgtcgagttttcacctaaactaactcaa
gccgttgagagtaaagagaaggcgagccttgcctttattgatgccaataaacagtttgag
tctgccaagttgctggttaacgctttcgatgctcaggacaaacttaagcaggcggcagaa
catttatcagagcaaaaagaggctatcggtcagcgtcagttcagtttagaaaatggtcaa
aaagcgcagcaattaaaacctgttttagatgtatcacaggctcgcgaaactgaactcact
catgctcaatcaggcgtgactcaggctcaagctgctaagcagcgcagtgagcaggcactg
gcactcagccaaagtaagtttgatagcttgagtgaattagaacagcaattacaacttgca
cagaatgaagaacaaaagttaagtcaactagtaccgcaacttcaggggctagatagcctg
caaaaagcgctcagcctcgcaacgaatgaacgagaccaggccaagaataaaggaatagaa
ggtcaggtaacattagccggtgttaaggagcaaaggcaggctggcgagcaacacatcccc
ctgttagagcaaactgctaatgagcaagttaatgctcagcaagcgcttacggcacaaagt
gagctgattgagcgttatcagcagtggcaagttgctagtcatcatgccgacaatacagaa
caggcattgaagcaggccgaagcgaaaggtaagcaacttcgttgtgatgccaaagataag
ggtgaggcttacgatcaattgcagttgctttggcaccgaggccaggcaagcatcttagcg
caaaagcttaatcccggagagccttgccctgtatgtggcagcgacgtacatccaatgcca
gcttatagtgagcatactttaccgacggaggatgagttagagtcaagcaagcaggcctgt
gaagctgctaaaggtgcactgaaccaggccatagctgattataaagggctcaaagcacag
ttgcaggagcaagtgaaacttaagaatgagcatcagcaaagactgggtgagtgggcttct
cttcctctagactcgttgcagtcgcttctcaagaaaatgcagctgcaagtgaatcaagct
aatgtagcagctcaagagttatctcagctcaggcagcagatacaaaactggcagtcaaag
gagagggatttacaaactcaactcgatgctgaacgagagatctttcatgagctacagaat
cgagtagccagtgctcaaggccaatctgatcaagcttgcatagcaatacctgagcaatat
cgcagcatagatgcgcttaatagtgcgataaaccaagctcagaatcatctaactggttta
cagcaagcgataaacaccatacgtcagtctcatacacaagcactggagcaagatgcggct
cagtctgctgcattagcgggggctgagtcgaatttaactcaagcaagggagcaaagtaat
aaggcacaagccgagcttaatgctgagttaggcaagtcaggatttagtgataagcaggca
ttaacccaggctctgttatctactgaagcgcttaaagatatagccgatgagattgctaag
tatcagcaggattgtatcgctaatcagaccacgcttactcaagtaagcgataagttagac
gggcaagttaaacctctgctaaccgatgctgaggcgctcgtggcgacgagtcagactgag
cagcgtgaggctgaacaaagctggcaggtgttacagagcagggtgagtcagctcactcag
actcagaagttgctgcaagaagccgatgctgatgcgaagaagttagaagatgagtacgcc
attatcggcaccttatctcaagtggctaatggacagacgggcaacaagatcagcttacag
cgcttcgtcttgagtgtgttgctcgatgatgtgctgctcgaggcgagtcatagattgcag
atgatgagcaaggggcgctatcgactgatacgtaaagaggagagggccaagggcaataag
gcttcagggcttgatctcgaggtggaagatgcttacacctctaaggtgcgcccggtggcg
accctgagcggcggtgagagctttatggcggcgctttctatggcattgggtttatcagag
gttgtgcaggcttacgctggggggattaaactagataccctgtttatcgatgagggtttc
ggcagcttagatcaagactcgctggatttagccatccgcaccttgatggatctgcaatct
tccggtcgcatgataggggttatctctcatgtctccgagatgaaggaacagattggcacc
cgcatcgatatcattaaaacagctcaaggcagtaaaacggttatcgttcttccttaa
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integrated database retrieval system
