Shewanella benthica: SHEWBE_2187
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Entry
SHEWBE_2187 CDS
T06707
Symbol
nrdD
Name
(GenBank) anaerobic ribonucleoside-triphosphate reductase
KO
K21636
ribonucleoside-triphosphate reductase (formate) [EC:
1.1.98.6
]
Organism
sbk
Shewanella benthica
Pathway
sbk00230
Purine metabolism
sbk00240
Pyrimidine metabolism
sbk01100
Metabolic pathways
sbk01232
Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09100 Metabolism
09104 Nucleotide metabolism
00230 Purine metabolism
SHEWBE_2187 (nrdD)
00240 Pyrimidine metabolism
SHEWBE_2187 (nrdD)
Enzymes [BR:
sbk01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.98 With other, known, physiological acceptors
1.1.98.6 ribonucleoside-triphosphate reductase (formate)
SHEWBE_2187 (nrdD)
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GFIT
Motif
Pfam:
NRDD
Gly_radical
ATP-cone
Zn_ribbon_TiaS
Zn_Tnp_IS91
DUF7129
Motif
Other DBs
NCBI-ProteinID:
SQH76153
UniProt:
A0A330M3Y5
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All DBs
Position
SHEWBE:2046343..2048460
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AA seq
705 aa
AA seq
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MPVVIKRDGYRTPFDETRIRDAVVAAANSAGIEDRSYAVSVAASVAKCVAEHAEIDIHEL
QDLVENHLMEGPYKSLARVYIEYRHDRDLHRETSSRLNQDIRGLVDQTNADLLNENANKD
AKVIPTQRDLLAGIVAKHYAIRHILPKDVVAAHESGEIHYHDLDYAPFFPMFNCMLIDLS
GMLTNGFKMGNAEIETPKSISTAAAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
KQYQLALDWGITDAKAFATAQTKKECHDAFQSLEYEVNTLHTANGQTPFVTLGFGLGTSW
ESRLIQSSMLEIRIAGLGKKRKTPVFPKLVFAIRDGINHKVGDCNYDIKQLALKCATIRM
YPDILNYEQVVKVTGSFKTPMGCRSFLGTYEEEGELIHEGRNNLGVVSLNLPRIALEVKG
DETEFYRILDLRLAIARKALDTRIERLEGVKARVAPILYMEGACGVRLRADDDISSIFKN
GRASISLGYIGLHETINALYGTDKHVYDCEILRQKAIEIIEYMKVATKKWTAETGYAFSL
YSTPSENLCSRFCKLDTQVFGVVEGVTQKGYYTNSFHLDVEKQVNPYDKLDFEQPYPALT
NGGFICYGEYPNMQNNLEALEDVWDYSYSRVPYYGTNTPIDECYDCGFTGEFECTSKGFT
CPKCGNHEPSRVSVTRRVCGYLGSPDARPFNFGKQEEVKRRVKHL
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgccagtggttattaagcgggatggttaccgcacgccttttgacgaaacaaggattaga
gacgctgtagtggctgcagcgaactcggcaggtattgaagacaggagttatgccgtgagt
gttgcggcctctgtggctaaatgtgtggcagaacatgctgagatagatattcacgagcta
caagacttggtcgagaatcacttgatggaaggtccttataagtccctcgctcgcgtctat
attgagtatcgtcatgatcgagatctgcatcgtgaaacaagcagtcgattgaatcaggat
atccgcggcttagtcgatcagaccaatgcggatctgctgaatgaaaatgccaataaagac
gcgaaagtgatcccgactcagcgcgacttgttagccgggatcgtggctaaacattatgcc
atccgacatattttacccaaagatgtggttgccgctcatgagtccggtgagatccattat
cacgatctcgattatgcgcctttcttccccatgtttaactgcatgctgatcgatctcagt
ggcatgttgactaatggcttcaagatgggtaatgccgagattgagacgcccaagtctatc
tctacggcggcggccgtgacggcgcagatcatcgcccaggtagccagccatatctatggt
ggtaccacgattaatcgtatcgatgaagtcttggctccctttgtcgctaagagttacgac
aagcagtatcagctggcgttggattgggggatcaccgatgcgaaagcctttgctaccgcg
cagactaaaaaagagtgccatgatgcgtttcagtctctggagtatgaggtcaatacctta
catacggccaatggacagacaccctttgtcaccttaggtttcggtttaggcacctcgtgg
gagtctcgtctcattcagtcatctatgctggagattcgtattgcgggtctgggtaaaaag
cgtaagacgccagtattccctaagctagtctttgccattcgtgatggtatcaatcacaag
gtgggtgactgtaactatgatatcaagcaacttgcgcttaaatgcgccacgattcgcatg
tatccggatatcctcaactatgagcaagtcgtaaaagtcaccggctccttcaagacccct
atggggtgccgtagcttccttggcacctatgaagaagagggtgagctgatccacgagggt
cgtaataacttaggcgtggtgagtctgaatctgccaaggattgcgctggaagttaagggc
gatgaaactgaattttatcgtatcttagatctgcgtctcgccattgcccgtaaggctttg
gataccagaattgagcgtttagaaggcgtgaaagcacgtgtggcgccaatcctgtatatg
gaaggggcttgtggagtaagacttagagccgatgatgatatctcaagtattttcaaaaat
ggtcgcgcctccatttctctgggctatatcggattacatgagacgatcaatgccctctac
ggcacggataagcatgtttatgattgtgaaatcttgcgtcaaaaagccatcgaaatcatc
gagtatatgaaagtggcgaccaaaaagtggacagcggagacgggttatgccttcagtctc
tacagcacaccgagtgaaaatctctgtagccgtttctgtaagctcgacactcaggtcttt
ggcgtggtcgaaggggtgacgcagaaaggctattacaccaatagcttccatctcgatgtt
gaaaagcaagttaatccatatgacaagttggattttgagcagccatatccagcattaacc
aatggcggtttcatctgctacggcgagtatcccaatatgcagaacaatctcgaggcatta
gaagatgtgtgggattacagctatagccgagtgccatattacggcaccaatacgcccatc
gatgagtgttatgactgtggttttaccggcgagtttgaatgtaccagtaaggggttcacc
tgccctaaatgtggtaatcatgagccgagtcgggtctctgtgactcgtagagtctgtggt
tacttaggcagtcccgatgcgaggccctttaactttggtaagcaagaagaagtgaagcgc
cgggttaagcacctttaa
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