Shewanella benthica: SHEWBE_2368
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Entry
SHEWBE_2368 CDS
T06707
Symbol
trmU
Name
(GenBank) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
KO
K00566
tRNA-uridine 2-sulfurtransferase [EC:
2.8.1.13
]
Organism
sbk
Shewanella benthica
Pathway
sbk04122
Sulfur relay system
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
SHEWBE_2368 (trmU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbk03016
]
SHEWBE_2368 (trmU)
Enzymes [BR:
sbk01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.13 tRNA-uridine 2-sulfurtransferase
SHEWBE_2368 (trmU)
Transfer RNA biogenesis [BR:
sbk03016
]
Prokaryotic type
tRNA modification factors
Thiolation factors
SHEWBE_2368 (trmU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_Me_trans
tRNA_Me_trans_M
tRNA_Me_trans_C
NAD_synthase
ThiI
QueC
Asn_synthase
ATP_bind_3
DUF7411
Motif
Other DBs
NCBI-ProteinID:
SQH76331
UniProt:
A0A330M2C6
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All DBs
Position
SHEWBE:complement(2224165..2225295)
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AA seq
376 aa
AA seq
DB search
MAFIEPTANSSKKVIVGMSGGVDSSVSAYLLLKQGYRVEGLFMKNWEEDDTDEYCAAADD
LKDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEF
ADEILDADYIAMGHYVRRCDETGQSRMLRGVDGNKDQSYFLYTLSHEQIARSLFPVGELE
KREVREIAKEMGLITHDKKDSTGICFIGERKFTDFLRTFLPAQPGNIETAEGEVIGKHQG
LMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGTHPRLMSVGFYADQLHW
VDRKGPINEASITVKTRYRQRDVACTLFLETNDKGQDTIRVLFDEPVAAVTPGQSAVFYS
DELCLGGGIIDSLIRG
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggcatttatcgaacccacagcaaatagcagtaaaaaagtcattgtcggcatgtccggc
ggtgttgattcatccgtctcggcttacttgctgcttaagcaaggttatcgggtcgaaggc
cttttcatgaaaaattgggaagaagatgataccgatgaatattgtgctgctgcagacgat
ctaaaagatgcccaagcagtatgtgacaagcttggcatcaagcttcataccgtcaacttc
gccgccgaatattgggacaatgtgttcgaatactttctcgccgaatacaaggcaggtcga
actccaaatccagatatcatctgtaacaaagagataaagttcaaagcatttctcgagttt
gccgatgaaattctcgatgccgattatatcgccatggggcattatgtacgccgctgcgat
gaaacgggtcagagccggatgttacgtggcgtcgatggcaataaagatcaaagctatttc
ctctacacactcagtcatgagcagattgcccgctctctcttccccgtgggcgagctcgaa
aaaagagaagtcagggagatagccaaggagatgggcctcatcacccatgacaagaaagac
agtaccggcatttgttttatcggcgaacgtaagttcaccgactttttacgcaccttctta
ccagcccagcccggcaatatagaaactgcagaaggcgaagtcattggcaagcaccaggga
ctcatgtaccacacattaggccagcgaaaaggcctgggtattggcggaatgaagaacagc
aatgacgacccttggtatgttgtcgataaagagatggacagaaatgtcttagtcgtcggc
caaggtggcactcatccgagattaatgtccgttggcttttatgctgaccagctccactgg
gtcgacagaaaaggccccatcaatgaagcaagcatcacggtaaaaactcgctatcgtcaa
cgagacgtggcctgtaccctgtttcttgaaaccaatgataaaggccaagacacaataaga
gtcctcttcgatgaacctgttgcggcggtgaccccaggccaatcggctgtcttctattct
gatgaactctgcttaggcggcggcatcatcgactcattaataagaggataa
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