Shewanella benthica: SHEWBE_2464
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Entry
SHEWBE_2464 CDS
T06707
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sbk
Shewanella benthica
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbk03016
]
SHEWBE_2464 (rnd)
Enzymes [BR:
sbk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SHEWBE_2464 (rnd)
Transfer RNA biogenesis [BR:
sbk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SHEWBE_2464 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
SQH76427
UniProt:
A0A330M9E5
LinkDB
All DBs
Position
SHEWBE:2331797..2332939
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AA seq
380 aa
AA seq
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MTQSWEKTLLAFEYIEDDASLTALVSQYRQSDLLVLDTEFVRTRTFYARLGLIQAYDGKT
LALIDPVAVNNLAEFWSLLTEPGITTVLHSCSEDLEVFARNGHCQPAHLFDSQIAAALCG
LGHGLGYAKLVEQTLDISLDKGESRTDWMKRPLSEAQLNYAANDVYYLYNLYPQLLEKLQ
QQGRLAWVIEEGERMTRGRLTPPDLEQAYLKVKNAFQLSPRQLAYLKVLARWRLKKAITR
DLAVGFVVKDHALIGLAKKQPKNSQDLFKMIELTEQEKRIHGKDLLALLNTADVENPPKA
IDVIALKTGYKTSFKAIKNCLVSISEQQEVPIELLGSKRYIHGYLQWLWDGKIGESPLLL
TGWRKDLVETALTELKLSNI
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgacacaatcttgggagaagaccttgttagcgtttgaatatatagaggacgatgcgagc
ttaactgcactcgtatcgcaatatcgacaaagtgatttattggtattagataccgagttt
gttcgcacccgcaccttttatgcccgtctaggtttaatccaggcctatgatggcaagacg
ttagctttgatagacccggtcgctgtcaataatttagctgaattttggagtttactgact
gagccaggtatcaccacagtgctgcattcatgcagtgaagacctcgaggtctttgcccgt
aatgggcattgccaaccagctcatctatttgatagtcagatcgccgcagccctatgcggc
ttaggtcatggactcggttatgctaagttagtggagcagacgttagatatcagcttagat
aagggagagtcgcgtaccgattggatgaagcgtcccttgagtgaggctcagctcaactat
gccgcgaacgatgtctattatctttataatctctatcctcagttgctcgaaaaactccaa
cagcaggggcgtttagcttgggtcattgaggagggagagcgaatgacccgaggccgatta
acgccgccggatctggagcaagcctaccttaaagttaagaatgctttccaattgagccca
aggcagttggcctacctcaaggtattggctcgatggcgcttgaaaaaagccatcacacga
gacttggcagtaggctttgtggttaaagatcatgccttgatcggtttagctaagaaacag
ccgaaaaatagccaagatctttttaagatgattgagcttaccgagcaagagaagcgaatt
cacggcaaggatcttttggccttattgaacactgccgatgtcgaaaacccgcctaaggca
atcgacgtaatcgccttaaaaacgggctacaaaacatcatttaaggcgataaagaactgt
ctggttagcatatcagagcagcaagaggttcccatcgagctcttgggatctaagcgatac
attcacggatatttacagtggctttgggacggtaagataggtgagtcgcccttgttattg
acgggctggcgtaaagatttggttgagacggcattgactgagttgaaattgtcgaatatt
tag
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