Shewanella benthica: SHEWBE_2492
Help
Entry
SHEWBE_2492 CDS
T06707
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sbk
Shewanella benthica
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbk03019
]
SHEWBE_2492 (hrpA)
Enzymes [BR:
sbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SHEWBE_2492 (hrpA)
Messenger RNA biogenesis [BR:
sbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SHEWBE_2492 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
GAS
NACHT
T2SSE
NTPase_1
TsaE
Spiralin
HA2_N
AAA_23
Motif
Other DBs
NCBI-ProteinID:
SQH76455
UniProt:
A0A330M364
LinkDB
All DBs
Position
SHEWBE:2359292..2363191
Genome browser
AA seq
1299 aa
AA seq
DB search
MLRVMGSDLSSQLHPLSNNYLKLCYQADASRIRRRLFRLNKEVDSDKKRANLDKLEAQAV
AAFEKVERRRQARPEITYPESLPISQKRDEIARAIAGNQVVIIAGETGSGKTTQIPKICL
ELGLGCRGLIAHTQPRRLAARSVASRIADELNSPLGEVVGFKVRFADAINQDSYIKLMTD
GILLAELTHDKFLDQYDTIIIDEAHERSLNIDFILGYLKNVLKKRPDLKVIITSATIDLD
KFSKHFDDAPVIQVSGRTYEVETRYRPLVRDAGEDLDLTEGIFEAVDELVAEGPGDILIF
MNGEREIRDVADQLNRRQYRDTEILPLYARLSYGEQSKVFKSHIGRRIVLATNVAETSLT
VPGIRYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVAAGICIRLFSEDD
FNNRSEFTDPEILRTNLASVILKMLSVGLGDIEAFPFLQPPDSRYIRDGFLLLEELEAVK
NSQGRLTLTTLGKQLAHIPVDPRLARMVIAANTNGCLHEALVITSALSIQDPRERPMDKK
QAADEVHKKHSDKDSDFVSFVNLWDHLKQQQKSLSSSQFRKQCKKEFLAYMRVREWQDLY
AQMRQAVHDLKWRLNSEPADYELLHKSLLTGLLSHVGFKDKDNEYLGARNRKFFVFPGSP
LARKGPKWIMAAELTETSRLFARCCAKIQPEWIEPLAGHLIKKNYLEPHFEAKQGSVVAL
ENQILYGLTIVNRRKTQYGPVNPLEAREIFIRSALADGELRTNEAFFINNRNLLKEVENL
EHKSRRRDILVDEQVLVDFYEPRIPEGIYNAPKFFSWWKAARNKTPDLLDFKREQLMQRG
DDHISALDFPDFWHQANLKLCLSYHFEPSAEDDGVAVHIPVALLNQIEDVDFDWQVPGLR
EEKCIALIRALPKSLRRNFVPAPDYANACMQAMKPFEMSFIDAMCKQLLRMSGVRVSIDD
FDLSQLPKHLLMNFKVEDDNGKLVAQARDIEQLKASLQGQVTQAIRQVADSGIEKTDLTQ
WSFGDLPKAFKQKKGNFEVKAFPALVDDKSSVSIKLFDDENEAVRSHQLGLQRLLLINIP
SPVKHLQQTLPNKAKLAMYFNPFGQIQILLDDILSASVQQLLDEKELDVRSESDFEQAKD
WVRQELNPTAVNIALRVEEILTLYQKVKKRLKGKISLDIAFAMSDIKNQLDKLVFKGFVE
ACGWKRLPDMVRYLKAVDNRLDKLPVDPNRDRLHMHSIANVQQELECQLAKVPRSVAIPE
MLLEARWMIEEYRVSCFAQVLGTAYPISEKRILNQIKQS
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
ttgcttcgagtaatgggatctgacttgagttcgcaactacatccgctatctaacaattat
ctaaaactgtgttatcaggccgatgcctcgaggatcaggcgtcgtctcttcaggctcaat
aaagaagttgattcggataagaagcgggcaaatctagacaagctcgaagctcaggccgtt
gcagcatttgaaaaggttgagcgacgccgtcaggcccgtcccgagatcacctatcccgaa
agcctgcctatttctcagaagcgagatgagatagccagggcgattgccggcaatcaagtg
gtcatcatcgcgggtgaaaccggctcgggtaagacgactcagataccaaaaatctgtctg
gagttaggcttaggttgccgcggcctcatcgcccatacccagcctaggcgtctagcggcg
cggagcgttgccagtcgtatcgccgatgaactcaatagtccactcggtgaggtggtcggc
tttaaagtacgctttgccgatgccatcaatcaagattcttacattaagttgatgaccgac
ggtatcttgttggctgagctgacccatgataagtttctcgaccaatatgacaccatcatc
atagatgaagcccatgagcgaagcctgaatatcgattttatcttaggctatctcaagaat
gtattaaaaaaacgcccggatttgaaggtgatcatcacctcggcgaccatagatctggat
aaattttccaaacatttcgacgatgcccccgttattcaagtctcggggcggacctatgag
gttgagactcgctatcgacccctagtgcgtgatgcgggagaggatctggatctcacagaa
ggcatattcgaagccgtggatgaactggttgccgaagggcccggtgacattctgatcttt
atgaacggtgagcgtgagatccgtgatgtggcggatcaactcaatcgccgtcagtaccga
gataccgagatcttgcccctctatgcgcgcctgtcatacggcgagcagtctaaggtgttt
aagagtcatattggccgtagaatagtgctggcgactaacgttgccgagacatcgttgacg
gtccccggcattcgttacgtcatcgatcccggcactgccaggatcagtcgttatagttac
cgcactaaggtgcaacgtctgcccatcgagcccatctcacaagccagcgctaatcagcgt
cagggacgttgtggccgtgtcgctgcgggtatttgtattcgtttatttagcgaggatgat
ttcaataacagatccgagtttaccgatcctgagattttaaggactaacctagcctcggtc
attctcaagatgctctcagtagggcttggcgacatagaagcatttcctttcctgcagccg
cctgactctcgatatatccgcgatggattcctgttactggaagagttagaagcggtaaaa
aattcacaagggcgcttaaccttgacgacactgggcaagcaacttgcgcatattcccgtg
gatccgcgtctggcccgtatggttatcgcggcgaacactaatggctgtctgcacgaagcc
ttagtgatcacctctgcattgtcgattcaagatccaagggaacgtcccatggacaagaag
caggcggccgatgaggtacataagaagcacagcgataaggattcagattttgtctccttc
gtgaatctgtgggatcacctcaagcagcaacaaaaatccctttccagtagtcagtttaga
aagcagtgtaaaaaagagtttcttgcctacatgagggtgcgtgagtggcaagatctctat
gcccagatgagacaagccgtgcatgatttgaagtggcgtctcaacagtgagcctgctgat
tatgagctactgcacaagtctctgctcacgggtctattgagtcatgttggctttaaagac
aaagataatgaatatttaggggcacgtaaccgtaaattcttcgtctttccaggttcacct
ctggctcgtaaggggcctaagtggatcatggcggctgagctcaccgagacttcacgtctg
tttgcccgctgttgcgccaaaattcaacctgagtggatagagcctttggccggacacttg
atcaagaaaaactatcttgagccacattttgaggcgaagcagggcagtgtggtggccctt
gaaaatcaaatactctatggactgaccatagttaaccgccgcaagacccaatacggcccg
gtcaatccactggaggcgcgtgagatttttattcgcagcgccttggccgatggtgaactg
agaactaatgaagccttcttcatcaacaaccgtaacttgctcaaagaggtcgagaactta
gagcataaatcacgccgccgcgacatattagtggatgagcaggtgttggtggatttctat
gagcccagaattcccgaggggatctataacgcccctaagttctttagctggtggaaggct
gcgcgtaataaaaccccagatctattagatttcaaacgtgagcaattgatgcagcgagga
gatgatcacatctcggcgttggatttccccgatttttggcatcaagctaatcttaaactc
tgcttgagctatcatttcgagccgtccgccgaggatgatggcgtggccgtgcatattcct
gtggcactgctcaatcagatagaagatgtcgatttcgactggcaggtccctggactgaga
gaggaaaaatgtatcgccctgatccgcgctctgcctaagagtctcaggcgtaattttgtc
ccggcgcccgattatgctaatgcctgtatgcaggcgatgaagcccttcgagatgagtttc
atcgatgccatgtgtaagcagttgctgcgcatgagtggcgttcgtgtcagcattgatgac
ttcgatcttagtcaactgcctaagcatctgctgatgaatttcaaggtggaggatgacaat
ggcaagttagtggctcaagctcgagatattgagcagctcaaagccagccttcaaggccag
gtgactcaagccattcgccaggtagccgattctggtatcgaaaaaactgacttgacccag
tggtccttcggcgacctgccaaaagcatttaaacagaagaaaggcaacttcgaggtcaag
gcgttccccgcattggtggacgataaatctagcgtatctatcaaattatttgatgatgaa
aatgaggccgttcgttcccatcaactgggtctgcagcgcttgttgttaatcaacattcct
tcaccggtaaagcatctgcagcagaccttacctaacaaggctaagctggccatgtatttt
aaccccttcggtcaaatacagatcttgttggatgatatcttatcggcgtctgtgcagcag
ttactcgatgagaaggaactggatgtacgcagtgagtccgattttgaacaggctaaagat
tgggtgagacaagaacttaatcccacggcggttaacatagccctcagagtcgaagagata
ttgacgctttatcaaaaggtgaagaagcgattgaagggcaagataagcctggatatagcc
ttcgccatgagtgatatcaagaatcagctggataaactcgtgttcaaaggctttgtcgag
gcttgtggttggaaacgtttacccgacatggtgaggtatcttaaagccgtcgataatcgc
ttagacaagttgccggtcgatcccaatcgtgaccgcttgcatatgcacagcattgccaat
gtgcagcaggagctggagtgtcagttagctaaagtgcccagatctgtggctatcccagag
atgctacttgaggcaaggtggatgatagaggagtatcgtgtctcttgttttgctcaggta
ttgggtacggcttatcctatctctgagaaacgtatcttgaatcaaataaagcaaagctaa
DBGET
integrated database retrieval system
