Shewanella benthica: SHEWBE_2566
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Entry
SHEWBE_2566 CDS
T06707
Symbol
thiC
Name
(GenBank) thiamin (pyrimidine moiety) biosynthesis protein
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
sbk
Shewanella benthica
Pathway
sbk00730
Thiamine metabolism
sbk01100
Metabolic pathways
sbk01240
Biosynthesis of cofactors
Module
sbk_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
SHEWBE_2566 (thiC)
Enzymes [BR:
sbk01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
SHEWBE_2566 (thiC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
SQH76529
UniProt:
A0A330M1J2
LinkDB
All DBs
Position
SHEWBE:2434701..2436878
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AA seq
725 aa
AA seq
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MAETVYSGPVEPDQVKTCEGNKHDNVHKLCESLYSFIVIICDIEISSRVCYSTLQASNFI
SIKVRLLMSNRRETRAKAQEFIDTLKPLQHPNSEKIYLTGSREDLRVGMRQILLSDTMVG
GTESDPILEPNAPLRVYDCAGPYSDPDADINVRRGLDKFRNNWIVERDDTEQLIGASSGF
TQQRLADDGLDHLRFDSLLPPRKAKPGKCVTQLHYARQGVITPEMEYIAIRENMAQSEIT
DEVLTRKAAGESFGASISEPITPEFVRSEIARGRAIIPLNINHPEAEPMIIGRNFLVKVN
ANIGNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYIHETREWIIRNSPVPIGTVPIY
QALEKVNGVAEDLTWDVFKDTLIEQAEQGVDYFTIHAGVLLRYVPMTANRLTGIVSRGGA
IMAKWCLSHHQENFLYEHFRDICKLCAAYDVSLSLGDGMRPGSIADANDEAQFAELETLG
ELVKIAWEYDVQTIIEGPGHIPMNLIKENMEKQLEVCDEAPFYTLGPQTTDIAPGYDHFT
SGIGAAMIAWFGCSMLCYVTPKEHLGLPNKEDVKQGLITYKIAAHAGDVAKGHPTAQIRD
NALSKARFEFRWEDQYNLGLDPQTAKAYHDESLPQESAKVAHFCSMCGPKFCSMKISQEV
REYAAAQKLEMHTDAEFKARSTADLSANVDREKGMAMMSAEFKAKGAALYHEAGTVKPVL
DEVEG
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
ttggctgagaccgtttattcgggacccgttgaacctgatcaggttaaaacctgcgaagga
aacaagcatgataatgtccataaattgtgtgaatctctgtattcatttatcgtcattatc
tgtgacatagagatcagttctcgtgtctgctattcaactctccaggcaagcaacttcatt
tcaattaaagtgagattgcttatgtcaaatcgccgcgaaacccgagctaaggctcaagag
ttcatcgataccctaaagccgctacagcaccccaattctgaaaaaatttatctaaccggt
agtcgtgaagacctccgtgtcggtatgcgccaaattctcctgtccgataccatggtggga
gggacagagtcggatcctatcttggaacccaatgcgccgctaagagtctatgactgcgcc
ggcccctattcagatcccgatgccgatatcaatgtccgcaggggcttggataaattcaga
aataattggattgtagaacgtgacgacactgagcaacttatcggtgccagttcaggtttt
actcagcaaagactcgccgatgatggcttagatcacctgagattcgattctttgcttcct
ccaagaaaggcgaaaccaggtaagtgtgtcactcagttacattatgccagacaaggggtt
ataacccctgagatggaatatatcgccattcgcgagaacatggcccagtctgaaattacc
gacgaggtattgacccgtaaggcagcgggtgaaagtttcggcgcctcgatttcagagcct
atcacccctgagtttgtccgaagtgaaattgcccgaggccgggcgattattccgttgaat
attaaccatccagaagccgagcccatgatcataggccgtaattttctggttaaggttaat
gccaatatcggtaactctgcggtgacttcatctatcgaagaggaagtcgagaagctggtc
tggtctactcgttggggcgcagataccgtgatggacttgtccaccggccgttatatacat
gaaacccgcgagtggatcattcgcaactctccggtgcctatcggaaccgtgcctatctat
caggccttagagaaggtgaacggtgtcgccgaggatctgacctgggatgtgtttaaggat
accttgattgagcaggcagagcagggcgtcgattacttcaccattcatgccggggtatta
ctgcgctacgtgccaatgacggcgaatcgcctgacgggtatcgtctcgcgtggtggcgcc
atcatggcaaagtggtgcctgtcccatcatcaggaaaatttcctctatgagcacttcaga
gatatttgtaagctttgcgccgcctatgatgtgtccttatctctgggggacggtatgcgt
ccgggttctatcgccgatgcgaacgatgaggcgcagtttgccgagctcgaaaccttaggc
gagttagttaagattgcctgggagtacgatgtgcagaccatcatcgaaggtcctggtcac
atccctatgaatcttattaaagagaacatggaaaaacagttagaagtgtgtgatgaagcc
cctttctataccttaggcccacaaacgactgatattgcacctggatacgatcactttacc
tcagggataggggcggcgatgatcgcctggtttggttgttccatgctctgttatgtgacg
cctaaagaacaccttggattgccaaacaaggaagatgtgaagcaagggttaatcacctat
aaaattgcggctcatgccggtgatgtggctaaaggacacccgactgcgcaaattcgcgat
aatgccttatccaaggcacgtttcgagttccgttgggaagatcaatataacctgggactg
gatccacaaaccgccaaagcctatcacgatgaatctctgccgcaggaatcagccaaggtg
gctcatttctgctccatgtgcggacctaagttctgttcgatgaagatcagccaagaggtg
cgtgaatatgccgcggctcagaagcttgaaatgcacaccgatgcagagtttaaggcgaga
agcacggccgatttaagcgcaaatgtggatagagaaaagggaatggccatgatgtcggct
gagtttaaggcaaagggcgccgccctctatcatgaagccggcacggtgaaacctgttctc
gatgaagttgagggttga
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