Shewanella benthica: SHEWBE_2789
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Entry
SHEWBE_2789 CDS
T06707
Symbol
gyrA
Name
(GenBank) DNA gyrase (type II topoisomerase), subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
sbk
Shewanella benthica
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbk03032
]
SHEWBE_2789 (gyrA)
03400 DNA repair and recombination proteins [BR:
sbk03400
]
SHEWBE_2789 (gyrA)
Enzymes [BR:
sbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
SHEWBE_2789 (gyrA)
DNA replication proteins [BR:
sbk03032
]
Prokaryotic type
DNA Topoisomerases
SHEWBE_2789 (gyrA)
DNA repair and recombination proteins [BR:
sbk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SHEWBE_2789 (gyrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
SQH76752
UniProt:
A0A330M3V1
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All DBs
Position
SHEWBE:complement(2685568..2688303)
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AA seq
911 aa
AA seq
DB search
MTDLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWN
KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYTLIDGQGNFGSVDGDAAAAM
RYTEIRMDKLAHQLLADLEKETVDFVPNYDGTEFIPEVMPTRIPTLLINGSSGIAVGMAT
NIPPHNITEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAIINGRKGIIEAYKTGRGRA
IMRSKADVQVEDNGRERIIVHELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGM
RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREV
VTRRTVFELRKARERAHILESLAIALANIDPIIAMIKASSTPAEAKVKLVAQGWELGHVK
AMLEKAGDDAARPEWLEPEYGIRDDRYYLTEQQAQAILDLRLHKLTGLEHEKILAEYEEL
IEIIAALLYILHSPERLLEVIKEELNEILENFGDERRTVINANEVDMSLEDLINEEDVVV
TLSHLGYAKYQPLTDYQAQRRGGKGKSAAKVKDEDFVEKLLVANTHDTILCFSDFGKLYW
LKVYQLPLASRQARGRPIVNLLPLSEGEHITAILPVRDYADDKYVIMATSHGTVKKTALK
AYSNPRANGIIAVNLKDGDQLIGVDITDGKSDIMLFSDAGKVVRFNEMVRDSETGLVKLD
AETNEELVALRPMGRTATGVRGIRLEDGQKVVSLIVPKADGAILTVTENGYGKRTALDEY
PAKSRATKGVVSIKVSERNGAVVGAVQVGENDEIMLISDRGTLVRTPATGVSTIGRNTQG
VTIIRIAEGEKVVGLQRIDEIHEDEVELDEEGNPIIQEGDNTEAGQVAEGEEPKEEPKGD
DEPEAEAEPAE
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgactgatctggcttcatctataacaccaattaatattgaagacgaattaaagaattca
tatctagattacgccatgagcgtgatcgtgggccgtgcactaccggatgtccgtgacggt
cttaagcccgttcaccgtcgcgtactcttcgcgatgagcgaacttaaaaacgattggaat
aaaccttataagaaatcggcacgtgttgtcggtgacgttatcggtaagtaccaccctcac
ggtgatactgcggtctatgacactatcgttcgtatggcacagcctttctccatgcgctac
accttaatcgatggccaaggtaactttggttccgtcgatggtgatgcggcggcggcgatg
cgttataccgaaattcgtatggataagttagcccatcagctattggcggatcttgagaaa
gagaccgtcgattttgtgcctaactatgatggtactgagtttattccggaagtgatgcct
acccgcataccgacactcttgattaacggctcctcaggcattgccgttggtatggcgact
aatatcccgccacacaacatcactgaagtgatcaaaggctgtttggcgctaatcgaagag
cctgcactgtccatcgaacagttaatggaatacattccaggtcctgatttccccactgcc
gccattatcaatggtcgcaaagggatcatcgaggcctacaagacgggtcgtggacgcgca
atcatgcgttccaaggctgatgtgcaagtagaagataatggccgtgagcgcattattgtt
catgaacttccctatcaggttaacaaggcccgcctcatcgagaagatcgccgagctggtt
aaagataagaagattgaaggcatcacaggtctgcgtgatgagtccgataaagatggtatg
cgcatcgttatcgagatcaaacgtggcgaggtgggtgaggttgtgctgaacaatctttat
gcccagactcagatgcaatgctcattcggcataaacatggtggccttgaccaatggtcag
ccaaaattgtttaacctaaaagagatgcttgagtgctttattttacaccgccgtgaggtg
gtgactcgccgtaccgtatttgaactgcgtaaagcgcgcgaacgtgcccacatccttgaa
tcactggctatcgctctggccaacatagatcctattattgccatgatcaaggcatcttcg
acgcctgctgaggccaaagttaagctggttgctcaaggttgggagttaggtcatgttaaa
gccatgcttgagaaagccggcgatgatgcggcgcgtcctgaatggttagagcctgagtac
ggtattcgtgatgatcgctattaccttaccgagcaacaagcgcaggccatcttagactta
cgcttacataagctaaccggtctcgagcatgagaaaatattagccgagtatgaagagctg
attgagattatcgcggctttactctacatcttgcatagccctgaacgcttattggaagtg
atcaaggaagagctaaacgaaatactggaaaacttcggtgatgagcgccgtaccgtcatc
aatgctaacgaagtggatatgagtctcgaagaccttatcaacgaagaagatgtcgtcgtg
accttatcgcacttaggctacgctaagtatcagcctttgaccgattaccaggctcagcgc
cgtggtggtaaaggtaagtcggcggcaaaagtgaaagatgaagacttcgtcgagaagcta
cttgtcgccaatactcacgataccattttgtgtttctctgattttggtaagctctactgg
cttaaagtgtatcagttgccgctcgctagccgtcaggctcgtggtcgtccaatcgttaac
ttactgcctctttctgaaggtgagcacatcactgccattcttccagtgcgtgattatgcc
gatgataaatacgtcatcatggcaacatctcacggcaccgtgaagaagacagcattgaag
gcatacagtaatcctcgtgcaaacggtattattgcggtaaatcttaaagatggcgatcag
ctcatcggcgtcgatattaccgatggcaagagtgacatcatgttgttctccgatgcgggt
aaagtggttcgtttcaacgagatggtgagagattctgaaacgggtctggtcaaactggat
gcggaaaccaacgaagagctggtggcattgcgtcctatgggtcgtaccgctaccggtgtt
cgtggtatccgcttagaagatggtcagaaagtggtttcattgattgtaccgaaagccgat
ggtgctatcttaaccgtcaccgaaaatggctacggtaagcgtaccgcactcgatgagtat
ccggctaagagccgtgcgactaaaggcgttgtttctatcaaggtcagcgaacgaaatggt
gccgtagtgggtgccgtccaagtcggtgaaaatgatgaaatcatgcttatcagtgataga
ggtactttggttcgtactcctgcaacgggtgtctccactattggtcgtaacactcaaggt
gtgacgattattcgtatcgccgaaggggagaaggtcgttggtcttcaacgtatcgatgaa
atccatgaggatgaagtcgagctcgatgaagagggcaatcctatcatccaagagggtgat
aacaccgaagcgggtcaagtcgccgaaggcgaagagcccaaagaagagcctaagggtgat
gatgagcccgaagctgaggcagaacctgccgaataa
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