Shewanella benthica: SHEWBE_2805
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Entry
SHEWBE_2805 CDS
T06707
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sbk
Shewanella benthica
Pathway
sbk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHEWBE_2805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbk03019
]
SHEWBE_2805
03400 DNA repair and recombination proteins [BR:
sbk03400
]
SHEWBE_2805
Enzymes [BR:
sbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SHEWBE_2805
Messenger RNA biogenesis [BR:
sbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SHEWBE_2805
DNA repair and recombination proteins [BR:
sbk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SHEWBE_2805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
SWI2_SNF2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
SQH76768
UniProt:
A0A330M3U1
LinkDB
All DBs
Position
SHEWBE:complement(2704466..2706430)
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AA seq
654 aa
AA seq
DB search
MSSNAITSQSHHLLQSYFGFEAFRPGQLDVIENILGGQSAVAIFPTGSGKSICYQLPAIA
LPHLTLVVSPLLALMQDQLSFLKQKGISAASIDSTQSREQANEIMRGIRSGQIKILMISV
ERLNNERFRQFISEIPLSLLVVDEAHCISEWGHNFRPDYLKLPRYRQELNIPQTLLLTAT
ATPKVIEDMEDKFGIAKENVSLTGFYRANLHLAVQGVKTLDKLDTLCHWLQPRQGLSGII
YVTLQKTAEQVAEHLSSRNIPAIAYHAGMNSDVRSKIQDDFMSGRQQLIVATIAFGMGID
KSDIRYVVHYDLPKSVENYAQEIGRAGRDGGDSDCLVLANGDNLITLENFVYGDTPESSA
IAIVLDEILKAAHSQSGNKGREWEVVLNSLSGQSNIRPLSLKTLLVYLELFNVIKPTYSY
FAEYKYKLLKGEEEILAGFNGERRDFVQAIFNSSDKAKIWFSINFDRLHQDYASDRQRVL
KAINYLDEKGMIELQSKQMTQVYDILDPNFSAQSLQSSLFERFSQKERSEIERINHLVAF
FTSDSCLSQQLAHYFADRNMTAACGTCSVCLGQLAVLPPQPYLRPLGELDFNALTQAGIN
KLDKACSPVLLSRFLCGLTTPIFTRLKMRACQGHASLEKYPFGEVKLWVESNLS
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaatgctatcacttcccagtcccatcacttgttacaatcttattttggcttt
gaagcgtttaggccaggtcaactggacgttatcgaaaatattttgggtgggcagagcgcc
gttgctattttccccaccggttccggcaagtctatctgttaccaactccccgccatcgcg
ctgccacacctgacattagtggtgtcgccattattggccttgatgcaagatcagctgtca
tttcttaagcagaaggggatcagtgcggcaagcatagattccactcagagccgggaacaa
gccaatgaaatcatgagggggataagaagtggtcagattaaaatattgatgatctcagtc
gagcgcctcaataacgaaaggttcagacagtttatctcagagatccccctgtctttgttg
gtggtggatgaggcgcactgtatctcagagtgggggcataatttccgccccgattacctt
aaattaccccgctatcgacaagagttaaatatcccacaaaccttactgttaactgccaca
gcgacccccaaggtgattgaggatatggaggataagtttggcatagccaaagaaaatgtc
agcttgaccggtttctatcgtgccaatctccacctggccgtacagggcgttaaaacgtta
gataaactcgataccctgtgtcactggttacagcccagacaagggctgtcgggcatcatt
tatgtcaccttgcaaaagactgccgagcaggtggccgagcaccttagcagcagaaatatc
ccggcaatagcctatcatgccggcatgaactcagatgtccgctcaaaaattcaagatgat
tttatgtcaggcaggcagcagcttattgtggcgacgattgcttttggcatggggatagat
aagagcgatattcgctacgtggtgcattatgatctgcccaagtctgtggaaaactatgct
caggagattggccgtgcgggccgtgatggcggcgattctgactgtctagtgttagccaat
ggtgataacttaatcacactggaaaacttcgtctacggcgatacgcctgaatcttcggcc
atcgctatcgtactcgatgaaattcttaaggcggcgcatagccagagtggtaacaagggt
cgggagtgggaagtggtgctcaatagcctgtccgggcaatccaatattcgccccttgtcc
ttaaagaccttgttggtgtatctggagctgtttaatgtgatcaagcccacctacagctat
tttgccgagtataaatataaattactcaaaggcgaagaggagatcttggccggttttaac
ggcgagaggcgtgattttgtgcaagccatttttaacagttcagataaagctaagatctgg
tttagtatcaatttcgataggctacatcaagattatgccagtgatcgccagcgtgtactc
aaagccattaattatctggatgaaaaaggcatgatcgagctgcagagtaagcagatgact
caagtctatgacattctagaccctaatttctctgctcaatctctgcagtcttctctgttt
gagcgattcagccaaaaagagcgcagtgagatagagagaattaaccatctggtcgccttc
tttacctctgattcatgcctcagccaacaactggctcactattttgccgataggaacatg
acggccgcttgtggcacttgcagtgtttgtctgggtcagctggccgtattaccgccgcag
ccttacctgcgtcccttaggcgaactggatttcaatgcgcttacccaagctggcatcaat
aaactggataaggcgtgcagcccggtactcttatcacgctttctgtgtggtttgaccacg
cccatatttacccgtctcaagatgagggcctgtcaaggtcatgcatctctggaaaaatat
cctttcggcgaggttaaactctgggtagagtctaatctgagttaa
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