Shewanella benthica: SHEWBE_3032
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Entry
SHEWBE_3032 CDS
T06707
Symbol
rne
Name
(GenBank) fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sbk
Shewanella benthica
Pathway
sbk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHEWBE_3032 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbk03019
]
SHEWBE_3032 (rne)
03009 Ribosome biogenesis [BR:
sbk03009
]
SHEWBE_3032 (rne)
Enzymes [BR:
sbk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SHEWBE_3032 (rne)
Messenger RNA biogenesis [BR:
sbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SHEWBE_3032 (rne)
Ribosome biogenesis [BR:
sbk03009
]
Prokaryotic type
rRNA processing factors
SHEWBE_3032 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
SQH76995
UniProt:
A0A330M4W0
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All DBs
Position
SHEWBE:2905944..2909180
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AA seq
1078 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVIKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAALSELDIPNGMGLIVRTAGVGKDSAEL
AWDLKVLANHWTAIKEASVGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEEA
KQHVALVRPDFADKIKHYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVHLDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEIYVIPDPNMSTP
DYRVLRHRKDDQISEASYKLLEQPESNLYEPRKLERVTAPEPALKGFTAPVKPPEPKAKA
ATAPKTTEEPGLIAKLFAAIAGLFKAEPKVEEPKKQSESSSQNRHNRRPDRKNDSRRNDS
RRSRDDKEQSGDKNERSSRPSRNKRADSNEERSSRDKGDQGKRQSRHDSKPTRTRQQADV
TDTTDTTDTTDATPKQEVARERRQRRNMRRKVRIETEKSQKLDEQHTEVVAAEVVVETAP
ISVKEDKQARPKRQPRKAKTDSKANDDVQVTKENDTIEVETTTPETQQDDKLDAVSQDSV
TVATSSVETSTAETAAVDATDDKPREGQRRSRRSPRHLRAAGQRRRREEDDGETNADATP
VFIPNETEIEFQANQVAASTAGVQSTTEAPVAAPTKPAAPVEVKVKAEVKAEAQSASAVP
TKPAAPVKVEAKVAAQAASAPTKPAAPVQTEAPIQAEAPIQAEAPIQAEAPIQAEAPVQT
EAPIQAEAPVPAVAKPEVNTVTAAAAKPATPVKVETQVAVEATAEVKAKVATPAKTLAKP
KGASRFGTMVSSDMIAPVVETRDNVEIPKGRQYEASESSSADAKPKTANSANSDMARP
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttaattaatgcgactcaatccgaagagttgcgcgtagccctagttgat
gggcaacagttatatgatctagatatcgaaagtccaggtcacgagcaaaagaaagccaat
atctacaagggtaaaattacccgtgtagagccctctctcgaagcggcatttgtcgattat
ggagcagaccgtcatggatttctgcccctcaaagagatcgccagagaatacttccctaaa
ggttactcttttcaaggtcgccccaatattaaagaggtgataaaagagggccaagaggtc
atagttcaaattgataaagaggagcgtggcaataaaggcgccgcactcacgacctttatc
agtttagcgggttcataccttgtcttaatgccaaacaatcctcgcgccggtggcatctct
cgccgtatcgaaggtgatgaacgcactgagctaaaggcggccttgtctgaattagacatc
cctaatggtatggggctcattgtgcgcacagccggtgttggcaaagactcagcagaactt
gcatgggatctaaaagtactggcgaatcattggactgcgattaaagaagcgtctgttggt
cgccctgcgcctttcctcattcaccaagaaagtaacgtcatcgttcgtgcgattcgtgac
tacttacgtcgtgatgtgggtgaagtacttatcgatcatcctcgcatcttcgaagaagcg
aaacagcatgttgctctggtacgcccagatttcgcagacaaaatcaaacactatgatgct
gaagtgcctctgttcactcatttccaaattgagacgcagatcgaatcggcattccaacgt
gaagtgcgtttaccctctggcggatcgattgttatcgaccccactgaggcattaacctca
atcgatatcaactcagcccgcgccactaagggcagtgatatcgaagagactgcgttaaat
accaacctggaagctgctgatgaaattgcccgtcaattacgtcttcgcgacttgggcggg
ctcgtggttatcgactttatcgatatgactcccgtacgtcatcagcgtgaagttgagaat
agaatgcgtgatgccgttcatttagatagagcccgtgttcagttgggacgcatctctcgc
ttcggtctgatggaaatgtcacgacaacgccttagaccttctctggaagagtctgctgca
catctatgtcctcgttgtcacggccaaggcaccatacgtggcactgagtcattagcactg
tcaatactgcgtctaatggaagaggaagcgataaaagagaatacctctcaaatcgaagcc
attgtgccagtcgatgtcgccgctttcctactcaatgagaaacgaaaagccattcgcatc
acagagcaacgtcatgatgtagaaatctatgtgatccctgatccaaatatgtctacgcca
gattaccgagtcttacgtcatcgcaaagacgatcagataagcgaggccagttataaactg
ctggagcagcctgaatccaatttgtatgagccccgtaagcttgagcgtgtaacggctcct
gagccagcgctaaaaggattcactgcgccagtcaaaccacctgaacctaaagccaaggca
gcaacagcgcctaagacaactgaagagcctggtctaatcgctaagcttttcgccgcgatt
gctggactgttcaaggctgaacctaaagtagaagagcccaagaagcaaagcgaatcaagc
agccaaaaccgtcacaatcgccgaccagatcgcaagaatgattcacgccgtaacgacagt
cgtcgtagtcgtgatgataaggagcaatcaggcgataagaatgagcgtagttcacgtccc
agccgtaataagcgtgcagactcaaatgaagagcgctcaagcagagataaaggcgatcaa
ggcaagcgtcaatctcgtcatgacagcaagccaactcgaactcgtcaacaagcagatgtg
actgatactactgatactactgatactactgatgcgactcctaaacaggaagttgccaga
gagcgtcgtcaacgtagaaatatgcgtagaaaagtgcgtatagaaactgaaaagtcacag
aagcttgatgaacaacacacagaagtagttgctgctgaagtggttgtagaaacggctccg
atttcggttaaagaagacaaacaggctcgtcctaagcgtcagcctcgtaaggctaagact
gatagtaaagctaatgatgacgttcaagttaccaaagagaacgataccatcgaagtagag
acgacaacgccagagactcaacaagacgacaaacttgatgctgtttctcaagatagcgtg
acagttgcaacaagctcggtcgaaaccagtactgctgagactgccgccgttgatgctaca
gatgataagccacgtgaaggtcagcgtcgcagtcgtcgtagcccacgccatcttcgcgca
gcgggtcaacgtcgtcgtcgtgaagaagatgacggtgagactaatgcagatgcaactcca
gtcttcatccctaatgaaactgaaattgaatttcaagcgaatcaagtagcagcatctaca
gccggtgtccagtccacaactgaagcgcctgttgcagccccgactaagcctgcggctcct
gtcgaagttaaagttaaagctgaagttaaagctgaagctcaatcggcatcggcagtgcca
actaagcctgctgctccggttaaagtcgaagccaaggtagcggctcaggcagcatctgca
ccgactaaaccagcagctccagtgcaaactgaggctccaatccaggctgaagctccaatc
caggctgaagctccaatccaggctgaagctccaatccaggctgaagctccagtgcaaact
gaggctccaatccaggctgaagctcctgtaccagccgtggccaagcctgaagttaacaca
gtcaccgctgcagcagccaagcctgcgactccggttaaagtagaaactcaggtcgccgtc
gaagcaacagccgaggtcaaagcaaaagtggcaacaccggcgaagactctagctaagcct
aaaggtgctagtcgctttggcactatggtgagctcagacatgatcgcacctgtggtagaa
acgagagacaacgtagagatccctaaagggcgtcaatacgaagcatctgaatcttcatca
gccgatgctaagccaaaaacggcaaattcagctaattcggacatggccagaccataa
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