Shewanella benthica: SHEWBE_3217
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Entry
SHEWBE_3217 CDS
T06707
Symbol
topA
Name
(GenBank) DNA topoisomerase I, omega subunit
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sbk
Shewanella benthica
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbk03032
]
SHEWBE_3217 (topA)
03400 DNA repair and recombination proteins [BR:
sbk03400
]
SHEWBE_3217 (topA)
Enzymes [BR:
sbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SHEWBE_3217 (topA)
DNA replication proteins [BR:
sbk03032
]
Prokaryotic type
DNA Topoisomerases
SHEWBE_3217 (topA)
DNA repair and recombination proteins [BR:
sbk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SHEWBE_3217 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
SQH77180
UniProt:
A0A330M844
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Position
SHEWBE:complement(3079124..3081877)
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AA seq
917 aa
AA seq
DB search
MEPNYSILRLFGADHSMGKSLVIVESPAKAKTINKYLGKDYIVKSSVGHVRDLPTSSSPD
SKVATKTPAEVRKMAPEEKAIYKSKKAKQALVARMGVDPENGWKAKYQILPGKEKVVKEL
QALAAKADKIYLATDLDREGEAIAWHLQEIIGGDESRFQRVVFNEITKTAIQDAFSKPAH
LDTNMVNAQQARRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVATRLVVDKEGEIKAFVP
EEFWDIHAQLNTQTNDLLNMQVVKFQGKAFNPVNEQQTLEAVSALSQSSFVVAARDDRAT
QSKPSAPYITSTLQQAASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDNVR
EMIAKEFGDKYLPDAPIRYGSKDGAQEAHEAIRPSNVKVQAALMNDMERDAQRLYELIWR
QFVSCQMTPAKYDATRLTVKSGEYELKATGRTLRFDGWTRVQTSIKKKNEEDNTLPHVDK
GDKLDLKELDPKQHFTKPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVRVESR
RFYAEKMGEIVSESLVGSFKELMSYDFTAGMEQTLDDVAKGELEWKAVLDGFYKDLTKQI
EQAELPPEEGGMRPNEMVLTDNIKCPTCERPMGIRTGTTGVFLGCSGYALPPKERCKTTL
NLTPGAEAVSENSEDVETDALRAKHRCDICGTAMDSYLIDETRKLHVCGNNPICVGHEVE
LGQFKIKGYEGPIIECDRCGNDMELKNGRFGKYFGCTNSECKNTRKLLKSGEAAPPKEDP
IHLPELKCTKSDGYFVLRDGAAGIFMAASTFPKSRETRAPLVEELVKYRELLWPKYAYLA
DAPVKDGDGNKASVRFSRKTKEQYVATDVDGKATGWISKFIDGKWVTEAKKKAKPKAKAT
TATATKAKPKAAAKTKA
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggagccaaattacagcattttgagactttttggcgcagatcattctatgggtaaatcg
ctagttattgtcgaatcaccggccaaagccaagactattaataaatatctcggcaaagat
tacattgttaaatcgagcgtaggtcacgtaagagacttaccaacatcatccagtcctgat
tctaaagtggcgactaaaacgccagcagaagttcggaagatggctccggaagagaaagcc
atctataagagcaaaaaagcgaaacaagcgcttgttgctcgtatgggagtagatcctgag
aacggctggaaagccaagtatcagatactcccaggtaaagaaaaagtggttaaagagctg
caggcgttagccgcgaaggctgacaaaatctatctcgcgaccgatttggatagagaggga
gaggccattgcatggcacttgcaggagatcataggtggagatgaatcccgttttcagcgc
gtcgtcttcaacgagatcactaagactgctattcaagacgcatttagcaaacccgcacat
ttagataccaatatggtcaatgcccagcaggctcgtcgattcctcgaccgcgtcgttggc
tttatggtatcacctctactatggaagaaagtcgctcgtggattatccgccggtcgagtt
cagtctgtggcaacgcgtttagtggttgataaagaaggcgagattaaggctttcgttccc
gaagagttttgggatattcatgcgcaattgaatacccagactaatgatctgcttaacatg
caggtggttaagtttcagggcaaggcatttaatcctgtcaatgagcagcaaaccctagaa
gcggtttcagctctgtctcagtcaagcttcgtggttgctgctcgagatgacagagcgact
cagagcaagccttcggcaccatatatcacatcgaccttgcaacaagcggcgagtacccgt
ttgggctttggggtcaagaagaccatgatgatggctcaacgtctctacgaagcgggtcat
attacctatatgcgtaccgactcgaccaatttgagtcaggaagccttagataatgtgcgc
gagatgatcgctaaagagtttggcgataagtacctgccagatgcacctattcgttacggc
agtaaagacggggcgcaagaggctcacgaagccattcgtccatcaaatgtcaaagtgcag
gcagctttgatgaatgacatggagagagacgcacagcgcttgtatgagctgatttggcgt
cagtttgtctcctgtcagatgactcctgcaaaatatgatgcgactcgtttaacggttaag
tccggtgagtatgaactcaaagcgactggtcgtacgctacgtttcgacggttggactcga
gttcaaactagcattaagaaaaaaaatgaggaagacaatacgctgcctcatgttgataag
ggcgataagttagatcttaaagagttggatcccaagcagcattttactaagccgccggcg
agatacagtgaagcgtctctggttaaagagcttgaaaaacgtggtatcggtcgtccatca
acctatgcgacgattatttcgactattcaggaccgtgggtatgtgcgcgttgaaagtcgt
cgtttctatgcagaaaagatgggtgagatagtcagtgaaagtttggttggcagcttcaag
gagctaatgagctatgactttaccgcgggtatggaacagacactcgatgatgtcgccaag
ggcgaactcgagtggaaagcagtgcttgatggcttctataaagatctcactaagcagata
gaacaggccgagctgccaccggaagagggcggaatgcgtccgaacgaaatggtacttacc
gacaatatcaagtgtccgacttgtgagcgtcctatggggatccgcactggcaccacaggt
gtgttcctcggttgttccggctatgccttaccgccgaaagagcgctgtaagaccaccctg
aatctgactccgggcgcagaagccgtgagtgagaacagtgaagatgttgaaacagatgcg
ttacgtgctaagcatcgttgtgatatctgtggtactgccatggacagctatcttatcgat
gagactcgtaagctacatgtttgtggtaataacccgatatgtgttggtcatgaggtcgaa
ctcggtcaattcaagattaagggttatgaaggccctattattgagtgtgatcgctgtggc
aatgacatggagctcaagaatggtcgtttcggaaagtacttcggttgtactaacagcgag
tgtaagaatacccgtaagctgttaaagagcggtgaagctgcgcctccaaaggaggatccg
attcatctccctgagcttaagtgtactaagtctgatggttacttcgtgcttagagatggt
gccgcagggatatttatggctgccagtactttccctaaatcacgtgaaactcgcgcgcca
ttagtggaagagttggtgaagtatcgtgagctattatggcctaagtatgcctatcttgcc
gatgcaccagttaaagacggtgatggtaataaggcatcggttcgctttagccgtaagacg
aaggagcaatacgttgctaccgatgtcgatggtaaggcaaccggctggatctctaagttt
atcgacggtaaatgggtgacagaggcgaagaagaaagccaagccaaaagcgaaagcgact
acggcaacggcaactaaagctaagccaaaagcggctgcaaagactaaagcatag
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