Shewanella benthica: SHEWBE_3266
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Entry
SHEWBE_3266 CDS
T06707
Symbol
fadD
Name
(GenBank) Long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sbk
Shewanella benthica
Pathway
sbk00061
Fatty acid biosynthesis
sbk00071
Fatty acid degradation
sbk01100
Metabolic pathways
sbk01212
Fatty acid metabolism
sbk02024
Quorum sensing
sbk04146
Peroxisome
Module
sbk_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SHEWBE_3266 (fadD)
00071 Fatty acid degradation
SHEWBE_3266 (fadD)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SHEWBE_3266 (fadD)
09145 Cellular community - prokaryotes
02024 Quorum sensing
SHEWBE_3266 (fadD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sbk01004
]
SHEWBE_3266 (fadD)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sbk04147
]
SHEWBE_3266 (fadD)
Enzymes [BR:
sbk01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SHEWBE_3266 (fadD)
Lipid biosynthesis proteins [BR:
sbk01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SHEWBE_3266 (fadD)
Exosome [BR:
sbk04147
]
Exosomal proteins
Exosomal proteins of breast milk
SHEWBE_3266 (fadD)
Exosomal proteins of breast cancer cells
SHEWBE_3266 (fadD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
SQH77229
UniProt:
A0A330M3F9
LinkDB
All DBs
Position
SHEWBE:3135965..3137695
Genome browser
AA seq
576 aa
AA seq
DB search
MEASFWNGKRAPGISDSIDLEQYGSAIDAIEEAFIKYADKPAFTSLGHTLSYQEINHYSA
AFAHYLQHQTSLVPGDAIAIQMLNTLQYPIAVFGALRAGLRIVNTNPLYTEPEMIHQFND
SGVKALLCMDIFAKSVENIQKETSLELIITTSLADMLPMVKRVLINSTVKHIKKMVPNYH
LPQAVSFRKVLQQHLGKGFTPAHLDKPDDTIVLQYTGGTTGVAKSAELTNTNIIANMLQA
GVVTHQHDEHGKPLLGEGQAIMVAPLPLYHIYSFTVHLMAFFRLGQHSILIANPRDTETF
IKAMKPFKINGLMGLNTLFVSLMESPSFKLLDFSELKFTLSGGTALMDDTAKRWKALTGV
GISEAYGLTECSPAVCMNPINGLERLGTVGQALQHTALKCIDALGEEVAIGERGELCVKG
PQVMKGYWNRPKATRESFTQDGQWLLTGDIAIIDADGFVSIVDRVKDMIIVSGFNVFPNE
IESVVATHPDVVNCAAIGVEDAKTGEAVKLYVVIQDNASLTGEEIRAFCKNKLTGYKIPR
QFEFRSELPMSPVGKILRRKLKDDNCATEEARKQRA
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggaagcatcgttttggaatggtaaacgcgcccctgggatctctgattccatcgactta
gaacaatacggctcggctattgacgccatcgaagaggcctttatcaagtacgcagataaa
ccggcatttaccagcttggggcacactcttagctatcaagagattaaccattacagcgcc
gcgtttgcccattacctgcaacatcaaacctcactcgtcccgggtgatgctatcgccatt
cagatgctcaataccctgcaataccccatcgccgtatttggtgccttgcgggcgggactg
cgtatcgtcaataccaatcccttgtataccgaacctgagatgatccatcagtttaacgat
tcgggcgtgaaagcccttctgtgcatggatatcttcgccaagtcggtggaaaacatccag
aaagagaccagtctcgaattgatcatcaccaccagcctcgccgatatgctgcccatggtg
aaacgcgtattgatcaactccaccgtcaagcatatcaagaagatggtccccaattaccat
cttcctcaggcagtatcatttagaaaagtgctgcaacagcatctgggcaaggggtttacc
ccagcccatctcgataagccagacgacaccatagttctgcagtacacaggcggcaccaca
ggtgttgctaagagcgccgagctcaccaataccaatattatcgccaatatgctccaagct
ggcgtggtgacacatcagcatgatgaacatggcaagcctctgcttggtgagggccaggcg
atcatggtcgcccccctgcccctgtaccatatctactcgtttaccgtgcacctgatggca
tttttcagactgggtcagcacagcatacttatcgccaatcccagagacaccgagaccttc
atcaaggcgatgaaaccttttaagataaacggcctgatggggcttaacaccctattcgtt
tccctgatggagagcccgagtttcaagctgctcgactttagtgagctgaaattcaccctc
tccggcggcacagccctgatggacgataccgccaagcgctggaaagcactcacaggtgtt
ggcatctccgaggcttatggtctgaccgaatgttcacccgccgtatgcatgaacccgatt
aacggtttagagcgattaggtaccgtaggccaagcgctgcaacacacggcgctcaagtgc
atagatgcactcggtgaagaagtggcgattggcgagcgcggcgagctctgcgtcaaaggt
cctcaggtgatgaaaggctactggaatcgtcccaaggccactcgagagtcctttacccaa
gatgggcaatggctgctcaccggtgatattgccattatcgatgccgatggtttcgttagc
atagtcgaccgggtcaaagacatgatcatagtctctggctttaacgtctttcccaacgaa
attgaaagcgtggtagcgactcaccctgatgtggttaactgcgccgctatcggtgttgaa
gatgctaagactggtgaggcggtcaagctctatgttgtcatacaagacaatgcctccctg
acaggagaagagataagggcgttttgtaagaacaaactcaccggctacaagatccctcgt
caatttgaattcaggagtgaactgcccatgtcacccgtggggaaaattcttaggcgtaag
cttaaagatgacaattgtgccacagaagaagcgagaaaacagcgcgcttag
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