Shewanella benthica: SHEWBE_3835
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Entry
SHEWBE_3835 CDS
T06707
Symbol
truD
Name
(GenBank) pseudoruidine synthase
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
sbk
Shewanella benthica
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbk03016
]
SHEWBE_3835 (truD)
Enzymes [BR:
sbk01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
SHEWBE_3835 (truD)
Transfer RNA biogenesis [BR:
sbk03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SHEWBE_3835 (truD)
Prokaryotic type
SHEWBE_3835 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
SLC35F
Motif
Other DBs
NCBI-ProteinID:
SQH77798
UniProt:
A0A330M6N6
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All DBs
Position
SHEWBE:complement(3690815..3691888)
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AA seq
357 aa
AA seq
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MIELHYLHGKPASKADLRTQNSDFIVQEILPFSPTGEGEHHLLHIRKEGLNTADVVKILS
GFAHVHPKEVTYAGQKDKNAITEQWFGVRIPGKETPTWASLNCDELTILSSQRHSKKLRI
GALAGNRFSLTLRNITDMQDVLARLALIKETGVPNYFGEQRFGHDGKNLVFGRQMFTGRK
VKDRKKRSMYLSAVRSYLFNYVTSMRLAEHGLEKLDGDSVMLAGSRSYFVAEQWDDALLK
RLDEKDIQLSAPMWGRGAALPRGDAADFEAKVLAEFDTDRDGLEHAGLEQERRPLLLEPQ
HLSYQQEGDDVIVIKFALPAGSFATSVLREVFDYEDVREREFRQRQLERREQEQGSV
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgatagaactgcattatttacatggtaaaccagcatccaaggccgatcttcgtacgcaa
aatagcgatttcattgtgcaggaaatattgcccttcagtcctacgggggagggagagcac
catctgctacatatacgtaaagaggggctcaatactgccgatgtggttaagatattatct
ggttttgcccatgttcatcctaaagaggtaacctatgcgggtcagaaggataaaaatgcg
atcactgagcagtggtttggcgtacgcattcccggtaaagagaccccgacttgggccagt
ttaaactgcgatgaactgactatcttgtctagtcagcgccacagtaaaaagttaaggata
ggtgccttggctggcaaccgcttcagtttaactctgcgtaatattaccgatatgcaagat
gtgctggctagattagcccttataaaagaaactggggtgccaaattatttcggtgagcaa
aggtttggccatgatggaaaaaatttagtcttcggtcgacagatgtttaccggtcgtaag
gtgaaagacaggaaaaaacgcagtatgtacctgtctgccgttcgttcttatctatttaat
tatgtcacatcgatgaggttggccgaacatggcctcgaaaaacttgatggcgacagtgtg
atgttagcgggtagcaggagctattttgttgccgagcaatgggatgatgcgttacttaag
cgtctggatgaaaaagatatccagctgtcggcacctatgtggggcaggggagcggcattg
cctcgaggcgatgccgcagacttcgaggctaaggtattggccgagtttgacaccgaccgt
gatggattagaacatgcgggattagagcaagagcgtcgtcccctgttactagagcctcag
catttatcatatcaacaagagggagacgatgtgatagtgattaaatttgcacttcccgca
ggcagcttcgcaacttccgtgctgcgagaagtgtttgattatgaagatgtcagagaacgg
gaatttcgccaacgtcagttagagcgacgtgagcaagagcaaggctctgtataa
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