Shewanella benthica: SHEWBE_3929
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Entry
SHEWBE_3929 CDS
T06707
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sbk
Shewanella benthica
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbk03016
]
SHEWBE_3929 (truB)
Enzymes [BR:
sbk01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SHEWBE_3929 (truB)
Transfer RNA biogenesis [BR:
sbk03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SHEWBE_3929 (truB)
Prokaryotic type
SHEWBE_3929 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
SQH77892
UniProt:
A0A330M715
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All DBs
Position
SHEWBE:complement(3783173..3784135)
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AA seq
320 aa
AA seq
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MGRRQRGRFIDGILLLDKETGMSSNFALQRVKRLFDANKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDADKRYLVTAKLGVRTDTSDSDGEVVQTRPLNFTQELLLESLDYFRGETMQ
VPSMFSALKHKGQPLYKYAREGIEVPREARPITVFELNFISLEGDELTLEIHCSKGTYIR
TITDDLGEMLGCGAHVIMLRRTQVADYPYDRIVSLTQLNEMVEKAEAEGVDPKAMLDELL
LPMDTAVSKFKEINLADSVKPYLMNGNPVQNPGGCELDEGELVRITIGEEHQFVGIGSIN
DDGLLAPKRLIVLRDDGETT
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggggcgtcgtcagcgtggtcgcttcattgatgggatcttgctcttagataaagagaca
ggaatgagctcaaactttgccctgcaaagggtaaagcggcttttcgatgccaataaagcg
ggtcatactggcgcattagatccattagccacaggcatgttacccatatgcctgggtgaa
gcgaccaagttttctcaacatcttctcgatgcggataagcgttatctggttacggctaaa
ctcggtgtacgtaccgataccagtgattctgacggtgaagtggtgcagactcgtccgctg
aatttcactcaagagttactgctggagtctctggattatttccgtggcgagacgatgcag
gtgccttcgatgttttcggcgctaaagcataagggccagcccctgtataagtatgcccgc
gaaggcatcgaagtgcccagggaagcccgacccattacggtatttgaactgaattttatc
tcgttagaaggcgatgagctgaccttagagatacattgttctaagggaacctacattcgt
actatcacagatgatcttggtgagatgttgggctgtggtgctcatgtgatcatgcttagg
cgtactcaagttgcagattatccttatgatcgcatcgtaagcttaactcagctaaatgag
atggttgaaaaagctgaggccgaaggtgtggatcctaaagctatgctggatgagttattg
ttgcctatggacactgcggtgagtaagtttaaagaaattaacttagccgacagtgtcaaa
ccttatctgatgaacggcaatccggttcaaaatccaggaggctgcgagttagacgagggc
gagctggtgcggatcactatcggtgaagagcatcagtttgtcggtattggctcaatcaat
gatgatggcctgctggcacctaagcgcctcatcgtgctcagagatgacggtgaaaccact
taa
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