Shewanella benthica: SHEWBE_3942
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Entry
SHEWBE_3942 CDS
T06707
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase, large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
sbk
Shewanella benthica
Pathway
sbk00220
Arginine biosynthesis
sbk00240
Pyrimidine metabolism
sbk00250
Alanine, aspartate and glutamate metabolism
sbk01100
Metabolic pathways
sbk01110
Biosynthesis of secondary metabolites
sbk01240
Biosynthesis of cofactors
Module
sbk_M00051
De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
SHEWBE_3942 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
SHEWBE_3942 (carB)
00220 Arginine biosynthesis
SHEWBE_3942 (carB)
Enzymes [BR:
sbk01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
SHEWBE_3942 (carB)
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D3
MGS
ATP-grasp_3
ATP-grasp
Dala_Dala_lig_C
ATP-grasp_4
ATPgrasp_Ter
CoA_binding_2
Motif
Other DBs
NCBI-ProteinID:
SQH77905
UniProt:
A0A330M7F0
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All DBs
Position
SHEWBE:complement(3798160..3801378)
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AA seq
1072 aa
AA seq
DB search
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM
ADATYIEPIHWEVVRNIIAKERPDAILPTMGGQTALNCALELESKGVLKEFNVEMIGATA
DAIDKAEDRGRFDKAMKAIGLECPRAGFAHTMAEAFAVQETLGFPCIIRPSFTMGGSGGG
IAYNIEEFEEICTQGLDLSPTSELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM
GVHTGDSITVAPAQTLTDKEYQLMRNASIAVLREIGVETGGSNVQFGINPKDGRMVVIEM
NPRVSRSSALASKATGFPIARIAAKLAVGYTLDELKNDITGGTTPASFEPAIDYVVTKMP
RFNFEKFAGANDRLTTQMKSVGEVMSIGRTFQESLQKALRGLEVGKNGLDPIIDIQDADA
MKRIRHELKEPGADRIWYIADAFRAGLALDDIYELTNVDPWFLVQIQDLLNFETQVKDVG
MSGLNEVFLRQLKRKGFSDLRLSDLLGVSESEVRKLRHKLEIHPVYKRVDTCAAEFSTDT
AYMYSTYEEECEANPSNRDKIIILGGGPNRIGQGIEFDYCCVHAAMALREDGYETIMINC
NPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARELEAAGVPI
IGTSPDAIDRAEDRERFQKAIQRLEMKQPENDTVTTVENAIISAERIGYPLVVRPSYVLG
GRAMEIVYDEQDLRRYFNEAVSVSNSSPVLLDRFLDNAIEIDIDAICDGETVVIGSIMEH
IEQAGVHSGDSGCSLPPYSLSEDVQNRMREQVEKLAIELGVIGLMNVQFAVKDDEIYMIE
VNPRAARTVPFVSKATGVPLAKIAARVMVGQSLKSQNFTKEVIPPFFSVKEVVLPFNKFP
GVDPMLGPEMRSTGEVMGIGDTFAEAYAKAQLGATATVPKSGRALLSVRDSDKQRVADLA
AKLIALGYEIDATHGTAVVLGEAGINPRLVNKVHEGRPHILDRIKNGEYTYIVNTTEGRQ
AIEDSRQLRRGALRYKVDYTTTLNAAFATCMAHSADDRSTVTSIQEWHKRLK
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacgtacagatataaaaagtattcttatcctgggtgcaggcccgattgttatc
ggtcaggcatgtgagtttgattactccggtgcccaggcgtgtaaagcgctacgtgaagag
ggttatcgagttattctggttaactctaacccagccactattatgacagatcctgagatg
gccgatgcgacgtatatcgagccaattcattgggaagttgtgcgtaatattattgccaaa
gagcgtcccgatgcaattctgcctaccatgggcggccaaactgcacttaactgtgcgctg
gagcttgaaagcaagggcgtgcttaaagaatttaatgtcgagatgattggcgcgacagcc
gatgccatcgacaaagccgaagaccgtggccgtttcgataaggcgatgaaagccattggc
ctcgagtgtccacgtgcgggttttgcccatacgatggcagaggcattcgcggtgcaggaa
actttgggtttcccgtgtattattcgcccgtctttcaccatgggtggcagcggcggcggt
attgcctataacatagaagaattcgaagagatttgtactcaaggactggacctgtcgcca
accagcgagctgcttattgatgagtcgcttatcggttggaaagagtacgagatggaagtg
gtgcgtgacaagaacgataactgcatcatagtctgctctatcgagaacttcgacgccatg
ggcgtgcacaccggcgactcgatcactgtggctccagctcagacactgacggataaagaa
tatcagttgatgcgtaatgcttctattgcggttctgcgtgagatcggtgtggagacgggc
ggttctaacgtacagtttggcatcaacccgaaagatggccgtatggttgtcatagagatg
aacccaagagtctcacgctcctcggcattagcgtctaaggcgacgggctttccgattgct
agaatcgccgctaagctggcggtgggttacactctcgatgagctaaagaatgatatcaca
ggcggtactacccctgcttcattcgagcctgccatcgattatgtggtgaccaaaatgccg
cgcttcaacttcgagaagtttgccggtgcaaatgaccgtcttaccactcagatgaagtcg
gttggtgaagtgatgtccattggccgtacgttccaggaatcactgcaaaaagcactgcgt
ggactcgaagtcggcaagaatggcctagatccaattatcgatatccaagatgccgatgcg
atgaaaagaattcgccacgagcttaaagagcccggcgcagacagaatttggtatattgcc
gatgccttccgtgccggtcttgctctcgatgatatctacgagctgactaatgtcgaccct
tggttcctggtacagatacaagatctgctgaattttgaaactcaggtcaaagacgtcggc
atgtcgggtctgaatgaggttttcttgcgccagcttaagcgtaaaggcttctctgattta
cgtttgtcggatctgctgggtgtcagtgagtcagaagttcgcaagttacgtcataagctt
gagattcatcctgtgtataaacgcgtcgatacttgtgccgctgagttctcaaccgatacc
gcttatatgtactctacctatgaggaagagtgtgaggcgaatccatctaatcgtgacaag
atcattatcttaggcggtggacccaataggattggccagggaatcgagtttgattattgt
tgtgtgcatgcggctatggcattgcgtgaagacggttatgagaccatcatgatcaactgt
aaccctgagactgtatcaaccgattacgacacgtccgacagactctattttgaatctgtg
actctggaagatgtactcgagattgtgcgtatcgagaagcctaagggcgttatcgtgcaa
tatggtggtcaaacaccacttaagttagctcgtgagctcgaagcggccggcgtgcctata
atcggtaccagcccggatgctattgaccgcgccgaagacagagagcgtttccagaaggcg
attcagcgtctggagatgaaacagccagaaaacgatacggtcactactgtcgaaaatgcg
attatctcggctgagcgtatcggttatccgctagtggttcgtccatcttatgtactcggt
ggtcgtgcgatggagatagtctacgatgagcaagatttgcgtcgctacttcaacgaagcc
gtgagcgtgtcaaactcctctcctgtattgcttgaccgtttcttagataatgccatcgag
atcgatatcgatgctatctgtgatggtgagactgtggttattggctctatcatggaacat
atcgagcaagctggcgtacactcgggtgattcaggttgttcattacctccctatagccta
agtgaagatgtgcagaatcgcatgcgtgagcaggtggagaaactggccatagaactcggg
gttattggcttgatgaatgtgcagtttgccgtgaaggacgatgagatctatatgatcgaa
gtaaaccctcgcgccgcacgtactgtaccatttgtttctaaggcaactggcgtaccttta
gctaagatagccgctcgtgttatggtgggtcaaagcctcaagtcgcaaaactttaccaag
gaagtgattccacctttcttctcggtgaaagaagttgtgttgccatttaacaagttcccg
ggtgtcgatcctatgcttggccctgagatgcgttctactggtgaggtgatgggtataggt
gacactttcgccgaagcgtatgctaaggcgcaactgggtgccacagccacagtgcctaag
tccggtcgtgccttgctatcggttcgtgacagcgataagcagagggtagcggacttggct
gctaagttgatagcactaggatatgaaatcgatgcgacccatggcactgcagttgtcctc
ggcgaggcggggattaacccgcgtctggttaacaaggtacatgaagggcgtccgcatatt
cttgaccgtatcaagaatggtgaatacacctatattgttaataccaccgaaggtcgtcag
gcgattgaagactctcgccagcttcgacgcggtgcattgcgatacaaggtagattatacc
acgaccttgaatgctgcatttgccacatgtatggcacattccgccgatgacagaagcact
gtgacttcgatacaagagtggcataaacgcctcaagtaa
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