Shewanella benthica: SHEWBE_3997
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Entry
SHEWBE_3997 CDS
T06707
Symbol
kdsA
Name
(GenBank) 2-dehydro-3-deoxyphosphooctonate aldolase
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
sbk
Shewanella benthica
Pathway
sbk00541
Biosynthesis of various nucleotide sugars
sbk01100
Metabolic pathways
sbk01250
Biosynthesis of nucleotide sugars
Module
sbk_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
SHEWBE_3997 (kdsA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
sbk01005
]
SHEWBE_3997 (kdsA)
Enzymes [BR:
sbk01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
SHEWBE_3997 (kdsA)
Lipopolysaccharide biosynthesis proteins [BR:
sbk01005
]
Lipid A
SHEWBE_3997 (kdsA)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
Motif
Other DBs
NCBI-ProteinID:
SQH77960
UniProt:
A0A330MAE2
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All DBs
Position
SHEWBE:complement(3850848..3851696)
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AA seq
282 aa
AA seq
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MSNKVIALGDIEIANDKPFVLFGGMNVLESRDLAMKIAETYAEVTQKLGIPYVFKASFDK
ANRSSINSYRGPGMEEGLKIFQEIKQTFNLPLITDVHEIHQCAPVAEVVDIIQLPAFLAR
QTDLVVAMAKTGAIINVKKPQFLAPHEMRHIITKFNEAGNDNIILCERGSSFGYNNLVVD
MLGMDEMKQSGYPVIFDVTHALQRPGGRTDSAGGRRAQVTELARSGMALGLAGLFIEAHP
DPDNAKCDGPCALPLNQLENYLTQMKAVDDLVKSFDAIDTSK
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataaagtcatagctctaggtgatatcgagatcgcaaacgataaacctttcgtg
ttattcggtggcatgaatgtgctcgaatctcgtgatttagcgatgaagatcgctgaaaca
tatgccgaagtgacgcagaagttaggtattccttatgtttttaaagcctcattcgataag
gctaatcgctcgtcgataaattcatatcgtggcccgggtatggaagaggggctgaagatc
tttcaggagattaagcaaacttttaatctgcctctgatcaccgatgtgcatgagatacac
cagtgtgcaccagtggcggaagtggtcgatatcattcagttacccgcttttttagcgcgt
caaactgatcttgtggttgccatggcaaaaaccggcgccatcatcaatgtgaagaagccg
cagttcttagcgcctcatgagatgcgtcatatcatcactaagttcaatgaagccggtaat
gataatattattctgtgtgaacgaggctctagtttcggttataacaacctagtcgtcgat
atgcttggcatggatgaaatgaagcaatctggctaccctgttattttcgatgtcactcat
gcgcttcagcgtcctggtgggcgaaccgacagtgctggtggtcgtcgagctcaggtaact
gagctcgcaagaagtggcatggccttaggtttggctggtctgttcatcgaagcacatccg
gatcctgacaatgccaaatgcgatggcccatgtgccttgccattgaatcagttagaaaac
tacctgactcagatgaaagctgtggacgatttggtcaagtcattcgatgccatagatacc
agcaagtaa
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