Shewanella benthica: SHEWBE_4421
Help
Entry
SHEWBE_4421 CDS
T06707
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sbk
Shewanella benthica
Pathway
sbk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHEWBE_4421 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbk03019
]
SHEWBE_4421 (deaD)
03009 Ribosome biogenesis [BR:
sbk03009
]
SHEWBE_4421 (deaD)
Enzymes [BR:
sbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SHEWBE_4421 (deaD)
Messenger RNA biogenesis [BR:
sbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SHEWBE_4421 (deaD)
Ribosome biogenesis [BR:
sbk03009
]
Prokaryotic type
rRNA helicases
SHEWBE_4421 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
SQH78381
UniProt:
A0A330M7R5
LinkDB
All DBs
Position
SHEWBE:4249735..4251579
Genome browser
AA seq
614 aa
AA seq
DB search
MSSNELTFRELGLSEPLLRSLDELGYEKPTPIQGASIIPLMAGKDILGQAQTGTGKTGAF
ALPLLSNIDPAINAPQILVLAPTRELAVQVAEAFATYAKFIKGLHVLPIYGGQSMHQQLN
ALRRGPQVIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQ
RQLALFSATMPEQIKRVANKYLTDPVHVKIAATTATVETTEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGSLDILI
ATDVAARGLDVERIGHVINYDIPYDTEAYIHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATKSRISPMDVPSPESVTERRLSRLGEQVAEIINKDSLDFMKGAVAQLCQQLEVDTDI
LAAALLQQVQKDRPLQLPAMNERQRDSRDARNSRDRNDRNDRNDRSARGERPRRDSRSTP
SNLGTADSLKDNPDVKMCRYIIDVGRDNGVGVGNIVGAIANEANIDSRYIGQIQLFDQIT
SIDLPAGMPADVLQHLTKVRVCGRPLNIREAEGAELPSGGDSRPPRRPRRSSSDRRPSSG
DRKPHRKGGAPKES
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaatgaactaactttccgcgaactcggtctttccgagcctcttttgcgttct
cttgacgagcttggctatgagaagccaaccccgattcaaggcgcaagtatcatccctctt
atggcgggtaaagacatactaggtcaggcgcagactggtacaggtaaaactggtgctttc
gcactgccactacttagcaacatagatcctgcgattaatgctccgcagattttagtcttg
gcaccgactcgtgaacttgcagtgcaagttgccgaagcattcgctacctacgctaaattt
attaagggcttacatgtactgccgatttacggtggtcagagcatgcaccagcaactgaat
gccctaagacgtggccctcaggtcatcgtgggtacgcctggtcgtgtaatggaccacatg
cgtcgcggtacactaaaactagattcactaaaagctatggtactcgacgaagccgatgaa
atgctaaaaatgggcttcatcgacgatatcgaatggatccttgagcatacgcctaagcaa
cgtcaactcgctcttttctctgcgactatgccagagcaaattaagcgtgtggctaataaa
tatttgaccgaccctgttcacgttaagattgctgctactacagcgacagttgaaaccact
gaacagcgctttgttcaggtatcacagcataacaagcttgaagccctggttcgtgtctta
gaagttgagaacaccgaagggattatcatcttcgtacgtactcgtaatagctgtgtagaa
cttgcagagaaacttgaagcccgcggttatgcatcatcgccacttcatggagatatgaac
cagcaggcgcgtgaacgtgccgtcgagcagcttaaacgtggctctttagacatcctgatt
gcaacagacgtcgctgcacgaggcctggatgttgaacgtatcggacacgtaatcaactac
gatattccttatgatactgaagcttatattcatcgtattggtcgtacaggccgagctggt
cgtacgggaatggcaattttgttcgtgacacacagagaaatgcgtatgctacgcactatc
gaacgcgcgactaagagccgtatctctccgatggatgtaccgagtccagagtctgtgacc
gaacgtcgtctttctcgcttaggtgagcaagttgccgagataatcaacaaagattcacta
gacttcatgaagggcgctgtcgctcagctatgtcagcaacttgaagttgatacagatatt
cttgccgccgctctgcttcagcaagttcagaaagaccgtcctctgcagctacccgcaatg
aacgaacgtcaacgtgatagccgagatgcacgtaattctcgtgaccgtaatgaccgtaat
gaccgtaatgaccgcagtgctcgtggtgagcgtccgcgtcgtgactcacgctcgactcct
agcaacttaggtactgcggactcacttaaagacaatccagacgttaagatgtgtcgttac
atcatagacgttggccgtgacaatggcgttggtgtaggtaacattgtaggtgcaatagct
aatgaagctaacatcgacagccgttacataggtcaaattcagttattcgatcaaataaca
tctatcgaccttcctgccggaatgccagcagatgtactacaacaccttacgaaagtgcgt
gtttgtggtagacctctgaacatccgtgaagctgaaggtgctgaacttccttcaggcgga
gatagccgtccaccacgtcgcccacgtagatcttctagcgatcgtcgcccatcatccggt
gacagaaagccacatcgtaaaggtggcgctcctaaagagagctaa
DBGET
integrated database retrieval system
