Shewanella baltica OS155: Sbal_3088
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Entry
Sbal_3088 CDS
T00478
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sbl
Shewanella baltica OS155
Pathway
sbl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal_3088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbl03019
]
Sbal_3088
Enzymes [BR:
sbl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sbal_3088
Messenger RNA biogenesis [BR:
sbl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sbal_3088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
P-loop_SecA
AAA_19
AAA_22
AroM
Gag_p24
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABN62569
UniProt:
A3D756
LinkDB
All DBs
Position
3613779..3615080
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AA seq
433 aa
AA seq
DB search
MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL
QKMVENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK
LKRGADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR
QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIG
KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRVLVA
TEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIE
KLIGQQIRRVTVPGYEVGSRELLLKQLQTRRSFAKKQQRTDNVGAQVTAEKNMQGRRVKM
KVGQAPSKAKKLK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgaatcttttagtttttcccccgagattttgcgcgctatctcagattgcggt
tatcaacaaatgacgcctattcagcagcaagcgatacctgctatccgccgcggccaagat
gtcttagccagtgcccaaaccggtacgggtaaaaccgccgctttcgcgctgccgatcctg
caaaagatggttgaaaatccaagcgaaacgttaaagtcgaatgcccgcgtattaattctt
acgccgacccgtgagcttgcggctcaagtcgctgacaacgttacggcctactgcaagtac
ttaaacttcagcgtgttaaccatttatggtggcgtaaagatagaaacacaagcgcaaaag
ctgaaacgcggcgccgatgtaattgttgccaccccaggtcgcttacttgagcaccttacc
gcctgtaacttaagcctgtcgaacgtcgactttttagtcctagacgaagccgaccgtatg
ttagacatgggctttagcgccgatattcaaaagatccttcaagcggtaaataagaagcgt
caaaacctgttgttctcagccactttctcaagtgcggttaaaaaactcgccaacgatatg
atggttaaaccgcaagtgatcagcgttgataagcaaaacactacggccgatacggttagc
caagtggtttatccggttgaacaacgccgtaaacgcgaactgctgtctgagctaatcggc
aagaaaaactggcaacaggtcttggtatttaccgcgacccgtgatgccgccgatacacta
gtcaaagaattgaatttagatgggatcccatctgaagtggtccacggagataaaggccaa
ggcagtcgtcgccgcgccctgcgtgagtttgtggcaggtgatgtacgcgtactggttgcc
accgaagttgccgcccgtggtctggatatcccaagccttgaatacgtagtcaactatgac
ttacctttcctcgcagaagactatgtccaccgtatcggtcgtacaggccgtgcggggaaa
actggcgtagccatttctttcgtgagccgcgaagaagaacgtaccttagccgatatcgaa
aaactgatcggtcaacaaattcgccgcgtcactgtgccaggttatgaagtgggcagccgc
gaattgctattaaagcaattgcaaacccgccgtagctttgccaagaagcaacaaagaacc
gacaacgtcggcgctcaagttactgctgagaaaaacatgcaaggccgccgcgtaaaaatg
aaggtgggtcaagcgcctagcaaagcgaaaaagcttaagtaa
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