Shewanella baltica OS185: Shew185_0190
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Entry
Shew185_0190 CDS
T00571
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sbm
Shewanella baltica OS185
Pathway
sbm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Shew185_0190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbm03021
]
Shew185_0190
03400 DNA repair and recombination proteins [BR:
sbm03400
]
Shew185_0190
Enzymes [BR:
sbm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Shew185_0190
Transcription machinery [BR:
sbm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Shew185_0190
DNA repair and recombination proteins [BR:
sbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Shew185_0190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
gerPA
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ABS06361
UniProt:
A6WHS2
LinkDB
All DBs
Position
236911..241128
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAIDLAKEIEQMREELPSINSETRRKKVTKRLKLMEAFYTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMAFMSVAEVEKAYATG
AAELHARVKVRITETIIGDTGERTEQRRIVDTTVGRALLSLILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVALDVFYPGTEDVLAPRNTLLDEAWCDKLEEYSIDEVIVRSVISCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKHVTNSDGKLVIVSRSSELAVIDELGREKERYKVPYGTVLEKLEEAAVEAGDVIANW
DPHTHPIISEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGTAGKEMRPMIRL
LGANGADLMIPGTEVPAQYFLPGSAIVNLEDNAQINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGDHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSAGDTDFLEGEQAEVSRVKIANRELIAQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDQLRGLKENVIVGRLIPAGTGYAYHKTRNEARAKKNEPV
VVNKITASEAEQNLADLLNLAGSQD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccatcaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccagtcaaagattacgaatgtttgtgcggtaagtacaaacgtttgaagcac
cgtggtgttatttgtgaaaagtgtggcgttgaagtaacccaaactaaagtacgtcgtgag
cgtatgggtcacatcgaactggctagcccagttgcgcacatttggttcttaaaatcacta
ccgtcccgtatcggcttaatgttggatatgacgctgcgtgatatcgaacgcgtactgtat
tttgaatcatttgtcgtgatcgagcctggcatgaccagccttgaacgtggccaaatgctg
acagaagaaacttatctggatgcattagaagaatacggtgatgagttcgaagctaaaatg
ggtgccgaagcagtgcttgaactgttacgtgctatagatttagcgaaagaaatcgaacaa
atgcgtgaagaattgccgtcaatcaactctgagactcgtcgcaagaaagtgactaaacgt
cttaagttgatggaagcattctacacttcaggcaacaagcctgagtggatgatcttaaaa
gtactgcctgtgttaccacctgacttacgtccgctggtaccgctcgatggcggccgcttc
gcgacttcagatcttaacgacctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccagacattatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgctattaccggttctaac
aagcgtcctctgaaatctttggctgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttattgggtaagcgcgtcgactattctggtcgttcggtaattaccgtaggtcctact
ctacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaagccattc
atctatggcaagcttgaaggtcgtggcttagctactaccatcaaagcggctaagaagatg
gttgagcgtgaagtggcggaagtatgggacgttctggatgaagtgatccgcgaacatcca
gtgatgctcaaccgtgcaccaacactgcacagactgggtatccaagcgttcgagccagta
ctgattgaaggtaaagcaatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagcc
cgtgccctgatgatgtctaccaacaacatcctgtcaccagccaacggcgagcctgttatc
accccgtctcaagacgtggtattgggtctgtactacaccagccgtgagcgtattaacggc
cgtggtgaaggtatggcatttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gctgctgaactgcatgcccgcgttaaagtacgtatcactgaaaccattattggtgacact
ggtgaacgtactgaacaacgccgtatcgttgatacgactgtgggtcgtgcactgctgtca
cttattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atctctaaactgttgaacacttgttatcgtcaactgggtctgaaagatactgttatcttc
gctgaccaattgatgtataccggtttccgttttgcaaccatctctggtgcctctgtaggt
atcgatgacatggttattccagacgagaaatacaccttagttgctgatgcagaagcggaa
gttcttgaaattcaagagcagttccaatctggtctagttacagccggtgagcgttacaac
aaagttatcgatatctgggcaagtgccaacgaaaaagtttctaaagctatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggtgttgaagagaaacaagcctcgtttaac
agcatctatatgatggctgactcaggcgctcgtggtagtgccgcacagatccgtcagttg
gcgggtatgcgtggtctgatggctaagcctgatggctcaatcattgaaacgccaattacc
gctaacttccgtgaaggtctaaacgtactccagtactttatttctactcacggtgcgcgt
aaaggtctagccgatacggcattgaagacagcgaactcgggttacctgacacgtcgtctt
gtagacgttgcacaagatttagtggttatcgaagacgattgtggtactcacgaaggtcta
accatgaagccgctgattgaaggtggtgatgtggttgagccgttacgtgaacgcgtactg
ggtcgtgtggttgcgcttgatgtgttctatccaggcactgaagacgtactcgcaccacgt
aacacgctactcgacgaagcctggtgtgacaagttagaagaatattcaatcgacgaagtg
attgtacgttctgttatttcttgtgatactgatttcggtgtgtgtgcagcctgttacggt
cgtgacttggcacgtggtcatatcattaaccacggtgaagcaatcggtgttgtggcagca
caatctatcggtgaaccaggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatcaagagcgtctgcagaaaacaatgtccaagtgaaaaactcgggttcattgaaactg
cataatgctaagcatgttactaacagtgacggcaaactggttatcgtttctcgttcttct
gaactggccgttattgacgagctgggtcgtgagaaagagcgttataaagtgccatacggt
actgtgctcgagaagctagaagaagcggctgttgaagcgggcgatgttatcgctaactgg
gatccacatactcacccaatcatttctgaagtggcgggtagtatcaagttcgtagacatg
attgacggtgtcactatgacacgtcaaacagacgaactaacgggtctgtcatcaatcgtg
atccttgacgttggtcagcgtggtactgcgggtaaagaaatgcgcccaatgatccgtctg
cttggcgctaatggtgctgacttgatgatccctggtactgaagtaccagcacagtacttc
ttacctggtagtgcgatcgttaacttggaagataacgcgcaaatcaacgtgggtgacgct
ttagctcgtattcctcaggaatcgtctaaaacacgcgacatcaccggtggtctgccacgc
gttgctgacttgttcgaagcgcgtaagccaaaagagcctgctattctggcggaaatctct
ggtaccatctcgtttggtaaagagaccaaaggtaagcgtcgtttggtgattacacctgct
gatggcggcgatcattatgaagagatgatccctaagtggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttatcgctgacggtccagaagcggcacacgacatt
ctgcgtcttcgtggtatccacaacgtagcaaactacattgtgaacgaagtacaggacgtt
taccgtctgcaaggcgtgaagatcaacgataagcatatcgaagtgatcatccgtcaaatg
ctgcgtaagtgtcttatcacttctgccggtgacactgacttcctcgaaggggaacaagct
gaagtgtcacgcgtgaagatcgctaaccgcgaactgatcgcccaaggtaaagtgcctgcg
accttcgaacgtgaactactgggtattactaaagcatctctggcaacagaatcctttatc
tcagcagcatcgttccaagaaactacgcgcgtactgaccgaagccgccgtaggtggtaag
agcgatcaattacgtggtctgaaagaaaacgttatcgttggccgattgatcccagccggt
actggttacgcttatcacaagactcgtaatgaagcgcgtgcgaagaaaaacgaacctgta
gtagtgaataagatcactgcaagtgaagccgaacagaacttggccgatctcttaaacctg
gctggtagccaagattaa
DBGET
integrated database retrieval system
