Shewanella baltica OS185: Shew185_0249
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Entry
Shew185_0249 CDS
T00571
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
sbm
Shewanella baltica OS185
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbm03000
]
Shew185_0249
Transcription factors [BR:
sbm03000
]
Prokaryotic type
Helix-turn-helix
Other families
Shew185_0249
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
GAF
Sigma54_activ_2
AAA_lid_14
HTH_8
HTH_30
AAA_5
AAA_2
PAS_4
Mg_chelatase
AAA_3
nSTAND6
PAS_9
HTH_22
PAS
HTH_1
PAS_8
RsmI_C
AAA_7
Phage-MuB_C
HTH_50
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ABS06420
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Position
286647..288527
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AA seq
626 aa
AA seq
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MAVKPHLPSTQAWLADSWQRSIGAGLSEFQLPQELRLDASELKQKHEQYQMLIALVQSHA
LPLFNQLMAHSNSRLLLSDAEGYVLRHWGVSRYSTKLADVALDIGVNWLEQHKGTNAIGT
ALTAKQAVSVVGEQHFIRQNRFMSCTACPIFSPQGEMLGVIDITSEQQRHTQQTLMLVSS
LAQQVETALLCHLPDSRYRIDLAAQPNLLNSGWQGIVIADSDGRIVGCNPMAKQLLSNAK
VGDSVEQYLGNNWSRAGGFNQHLDLHLLTQPLNIPSIKSRVATSNKSLNQLGVRFRDPQL
ERAWQHANKVITKQIPLLVLGETGVGKEQFVKKLHAQSARRSEPLVAVNCAALPAELVES
ELFGYQAGAFTGANRTGFIGKIRQAHGGFLFLDEIGEMPLAAQSRLLRVLQEREVVPVGS
NQSFKVDIQIIAATHMDLEKQVTQGLFRQDLFYRLNGLQVRLPALRERQDIERIIHKLHR
KHRIALQAICPELLGQMMQHDWPGNLRELDNLMQVACLMAEGDDTLTWQHLPDYLAAKLM
CEPLCEEAKTCQDAASHPLSSGIAPQPNALFLAAETADINSLHGAIYSNVLQAFQACNGN
VSQCAKRLGISRNALYRRLKQMGLKG
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcagttaaaccgcatttaccatcgacacaggcgtggttggccgattcgtggcagcgc
agcattggcgctggcttgtcagaatttcagttaccccaagagcttagactcgacgccagc
gaactaaagcagaaacatgagcaatatcaaatgctcattgcattagtgcaatcccatgct
ttgcctttgttcaatcagttgatggcgcattctaatagccgactcttgctctccgatgcc
gagggttatgtgcttaggcactggggcgtgagccgttactccacaaaactggcggacgtg
gctttggatatcggggtgaattggctcgagcagcacaaaggcaccaatgcaatagggacg
gcactcacagccaaacaagccgtatctgtagtgggtgagcagcattttattcgtcagaat
cgttttatgagttgcaccgcctgcccgatattttctccccaaggtgagatgctcggggtg
atagatatcaccagtgagcagcaaagacacacacagcagacgttgatgttagtatcgagc
ttggcgcagcaggtcgagaccgcgctcttgtgtcatctgcccgatagccgttatcgaatc
gatttagcggcgcagccaaacctactgaattcgggttggcagggcatagtgattgccgac
agtgatggtcgcattgtggggtgcaatcccatggcgaaacaattgcttagtaatgccaag
gttggcgattcagtcgagcagtacttaggcaataattggagccgtgcgggtggctttaat
cagcatttagacttgcatctactgactcagcccttaaatattcccagcatcaagagtcgg
gtagcgactagtaataaatcgcttaatcaactgggcgtgcggtttcgcgaccctcaactt
gagcgcgcatggcaacatgccaataaggtgatcaccaagcaaattccgttgttagtgctc
ggtgaaaccggcgtcggtaaagagcagtttgttaaaaagctccacgcccagagtgcgcgg
cgcagcgagcccttagtggcggtgaactgtgcggcattgcctgcagagttagtcgaatct
gaactctttggttatcaggcgggcgcgtttactggggcgaaccgcactggatttatcggc
aaaattcgccaagcccacggcggttttttgtttttagatgaaataggtgaaatgccgctg
gcggcacagagtcgtttactcagggtattgcaggagcgcgaagtggtgcccgttggcagt
aatcaaagctttaaagtcgatatccaaatcattgccgcgacccatatggatttagaaaaa
caggtgactcaagggctgtttcgacaggatttattctatcggttaaatggcttgcaagtg
cgtttgcctgcgctgcgggagcggcaggatatcgagcgcattatccataaattgcatcgt
aaacatcgcattgcgctgcaggcgatctgccctgaactgttaggacagatgatgcaacac
gactggcccggcaatttgcgtgagctggataatcttatgcaagtcgcttgcttgatggct
gaaggggatgacaccctaacttggcagcatttacccgattatcttgcggccaagctaatg
tgcgagccgttatgtgaagaggctaaaacctgccaagatgctgcatcacacccgctaagt
agcggtatagcaccccagcccaatgctctatttttagccgcagagactgcagatatcaat
tctctccatggggcgatttatagcaatgtactgcaggcatttcaggcctgtaatggcaat
gtgagccaatgtgccaagcgcttaggaattagccgtaatgccttatatcgtcgattaaaa
cagatgggacttaagggttag
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