Shewanella baltica OS185: Shew185_0552
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Entry
Shew185_0552 CDS
T00571
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sbm
Shewanella baltica OS185
Pathway
sbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shew185_0552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbm03019
]
Shew185_0552
03009 Ribosome biogenesis [BR:
sbm03009
]
Shew185_0552
Enzymes [BR:
sbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Shew185_0552
Messenger RNA biogenesis [BR:
sbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shew185_0552
Ribosome biogenesis [BR:
sbm03009
]
Prokaryotic type
rRNA helicases
Shew185_0552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABS06720
LinkDB
All DBs
Position
complement(633163..635085)
Genome browser
AA seq
640 aa
AA seq
DB search
MSSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSER
QLALFSATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLE
VENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE
RSTNSRISPMKIPSPETVAERRLSRLGEQLAETINGDLDFMKEAVAQLCQQLEVDTDLLA
AALLQQVQQERPLQLPAIQERVRDERSERTERSDRGSDRNDRGGERGERRSREPRPMPAS
LGSAEALKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTV
DLPDGMPKDVLQHLRKVRVCGKPLNIREAGDQVFVDSGRSARSDRPAGDRKPRGDRPTGD
RPAGDRKPRAASTGDKPFADRKPRADKPAGERKPRKPRED
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgatgaaagaactttccgtgaactcggcctatccgagaatttgttgcgtgct
cttgacgagctaggttatgaaaaaccgacgccaatccaatcagccagtattgatccactt
atggctggcaaagatattttaggtcaagcgcaaacaggtacaggtaaaactggcgccttc
gctttaccactattaaacaaagttaccagccaaactacaccgcaaattttagtcttagca
ccaacacgtgaattagccgtgcaggttgctgaagcgttcagtagctatgccaaatttatg
aagaatttccacgttcttcctatctatggcggccaaagcatgcaacaacagttgaatgcc
ctgaaacgtggcccacaagttatcgttggtacgccaggtcgtgttatggaccatatgcgt
cgcggcaccttgaaactcgactcattacaagctttagtgcttgatgaagccgatgaaatg
ttaaaaatgggcttcatcgatgatatcgaatggatccttgagcacacgccaagcgagcgc
caactggcgttattctctgccactatgccagagcaaattaagcgtgttgctaaccagcac
ttacgtaatcctgtacatgttcgtatcgaatcaagccaaactacggttgagtcaatcgaa
cagcgtttcgtacaagtatcacaacacaacaaacttgaagctttagtacgtgtattagaa
gttgaaaacactgaaggtgtgatcatattcgtgcgtactcgtaactcatgtgttgagtta
gctgagaagttagaagcccgcggttatgcttcatcaccactacacggtgacatgaaccag
caagcccgtgagcgtgcagttgaccaactgaaacgtggcaagttagacattctgatcgcg
actgacgttgcggcccgtggtcttgacgttgagcgtatcggtcacgttgtaaactacgat
attccgtatgatgctgaagcttatgtacaccgtattggccgtacaggccgtgctggccgt
actggtatggcgatcctgtttgtaactagccgtgaaatgcgcatgctgcgcaccatcgag
cgttcaacgaacagccgcatttcaccaatgaaaatcccaagcccagagactgttgcagaa
cgtcgtctgtctcgcttaggtgagcaattggctgaaacaatcaacggcgatttagatttt
atgaaagaagctgttgctcaattatgccaacagttagaagtcgatactgatctgctagcc
gctgcattattacagcaagttcagcaagaacgtcctttgcaattgccagcaattcaagaa
cgtgttcgtgatgaacgcagtgagcgcactgaacgtagcgaccgcggaagtgatcgtaat
gaccgtggtggtgagcgtggtgaacgcagaagtcgcgaaccgcgtccaatgccagcaagc
ttaggctcagctgaagcgttgaaagacaatccagatttgaaaatgtgccgttacgtgatc
gacgtaggtcgtgagaatggtgtaggtgtgggtaacatcgttggcgctatcgcgaacgaa
gctaacatcgacagccgttacattggcgcaatccaactttacgatgcagtgaccactgtt
gacctgccagacggcatgccaaaagacgtgttacagcacctacgtaaagtacgtgtttgt
ggcaagccattgaacatccgcgaagctggcgatcaagtatttgttgattcaggccgtagt
gctcgttcagaccgccctgctggtgaccgtaaaccacgcggcgatcgtccaacgggtgac
cgcccagctggtgaccgtaagccacgcgctgcgtctactggtgacaagccatttgctgac
cgcaaaccacgtgcagacaaacctgccggtgagcgtaagccacgtaaaccacgtgaagac
taa
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