Shewanella baltica OS185: Shew185_1188
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Entry
Shew185_1188 CDS
T00571
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sbm
Shewanella baltica OS185
Pathway
sbm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Shew185_1188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbm03021
]
Shew185_1188
Transcription machinery [BR:
sbm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Shew185_1188
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ABS07339
LinkDB
All DBs
Position
complement(1425214..1427097)
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AA seq
627 aa
AA seq
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MLSVRRCNSFPTWMISMDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDI
IQMINDMGIRVFEEAPDADDMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMRE
MGTVELLTREGEIVIAKRIEEGINTVQSSVAEYPQAIAMILEQFDQFEADELRLSDIISG
FVNPDEDVAPTATHIGSELSEEELEDEDDEEDDDDTEDEEEGNKGPDPEEARERFGQLRT
AYESALKIIEAKGREHPESVKALFEIGEIFKEFRLVPKQFDRLVKSMRTMMDRVRVQERL
VLKLCVEQAKMPKKNFVKLFTGNETNLDWFNTEKASTKPYAEGLRMVEDDVIRCRTKLAA
VEEETGLAISAIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ
EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRI
SRQMLQEMGREPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDT
TLELPLDSATSESLKNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRER
IRQIEAKALRKLRHPSRSEILKSFLDE
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgctaagtgtccgtcgttgtaacagtttcccaacttggatgatatctatggatcatact
ccgcagtcgcaacttaagctgttgcttgccaaaggtaaagagcaaggttacttaacctat
gcagaagtgaacgatcacttacctgcagacatggtcgattctgaccagatcgaagatatt
atccagatgataaatgacatgggtatccgggtgttcgaagaagcccctgatgccgatgac
atgatgatgtcggaagacaacacagacgaagatgccgctgaagaagccgctgccgcactg
gcaacagtagaaagcgaacttggccgcacaaccgatcccgtgcgcatgtacatgcgtgaa
atgggtaccgttgagcttctgacccgcgaaggcgaaattgttatcgccaaacgcatcgaa
gaaggcatcaacacagttcaaagttcagtcgccgaatacccacaagcgatcgctatgatc
cttgagcaattcgaccaatttgaagccgacgaactgcgcttatctgatattatctctgga
tttgttaaccctgacgaagacgttgcaccgaccgccactcacatcggctcagaattatct
gaagaagagctggaagatgaagatgacgaagaagatgacgacgacactgaagatgaagaa
gaaggcaacaaagggccagatcctgaagaagcacgcgaaagattcggtcaactgagaaca
gcctacgaaagtgcactgaaaattatcgaagctaagggccgtgaacaccctgaatcggta
aaagcgctattcgaaatcggtgaaatcttcaaagaattccgcttagtacctaaacagttt
gaccgtttagtgaaaagcatgcgcactatgatggatcgcgtacgtgttcaagaacgttta
gtgttaaaactgtgcgttgaacaagccaaaatgccgaagaaaaacttcgtcaaactcttc
acaggcaacgaaaccaacctcgattggttcaacactgagaaagcctcaactaaaccttat
gccgaaggcctaagaatggttgaagacgacgtgatccgttgtcgcaccaagcttgctgca
gttgaagaagaaaccggcttagcaatttctgccataaaagacatcaaccgtcgtatgtca
atcggtgaagctaaagcgcgccgtgcgaagaaagaaatggttgaagccaacttacgtctg
gtaatttctatcgcgaagaaatacaccaaccgtggtctgcaattcttggacttaatccaa
gaaggtaacattggcttgatgaaagccgtggataaattcgaataccgtcgtggctacaag
ttctcgacctatgctacttggtggatccgtcaggcgattactcgttctattgctgaccaa
gcgcgtacgatccgtattccagtacacatgatcgaaacgatcaataagctgaaccgtatc
tctcgccaaatgctacaggaaatgggccgtgagccttcacctgaagaactggctgagcgt
atgatgatgccggaagataagatccgtaaggtactgaaaatcgctaaagaacctatctcc
atggaaaccccaatcggtgacgatgaagattcgcatttaggtgattttatcgaggataca
accctcgaactaccactggactcagcgaccagcgaaagcttgaaaaacgccactcacgaa
gtgttagcaggtctaaccgcccgtgaagcgaaagtattgcgtatgcgttttggtatcgat
atgaacactgaccacactcttgaagaagtgggtaagcagttcgacgtaacccgtgaacgt
attcgtcagattgaagctaaggcactgcgcaaactgcgtcacccttcacgctcagaaatc
ttaaaatcattcctagatgaatag
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