Shewanella baltica OS185: Shew185_1707
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Entry
Shew185_1707 CDS
T00571
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sbm
Shewanella baltica OS185
Pathway
sbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shew185_1707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbm03019
]
Shew185_1707
03009 Ribosome biogenesis [BR:
sbm03009
]
Shew185_1707
Enzymes [BR:
sbm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Shew185_1707
Messenger RNA biogenesis [BR:
sbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Shew185_1707
Ribosome biogenesis [BR:
sbm03009
]
Prokaryotic type
rRNA processing factors
Shew185_1707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABS07850
LinkDB
All DBs
Position
complement(2052944..2056390)
Genome browser
AA seq
1148 aa
AA seq
DB search
MQRSAMFDDLYLKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIY
KGKITRVEPSLEAAFVDYGADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIV
QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPA
GMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQVKGAPFLIHQESNVIVRAIRDYL
RRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVPLFTHFQIESQIESAFQREV
RLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLV
VIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHI
CPRCHGQGTIRSTESLALSILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITE
QRHDVEVYVIPDAHMMTPDYRVIRHRSDDEISESSYKRIEQPEAKLYEPRKLERTAAPIP
ALKGFAAPQKVEQAPSPTVKVEAPQPGFFSKLVSAISAMFAPSEKAEPVKVVETKTTDTS
AANANRRNRRNDTRRPRNAQDADKAKEGTREPRSRNSKKPADAAVNTSAQERPVREKEET
KRPARSEPKPRVQAPKDVVADVEADAPKQEVARERRQRRNMRRKVRIDNGHNTPDNAIPI
APEDAAEVLAEIAAVNAAAASTISVDTKTEVVQAPTETKAPRTRRQPRKEAAPAQEAAEN
VAVEEKAVSSAVTETPAVDAVKTEEQAEVVTADVTAPMDAISQDNDAIDTESETADDQAK
REQRDGQRRSRRSPRHLRAAGQRRRRDEDDQGTSTPAQFIPNDELGANQEYPSEVASVRV
EAPVVATKTDAVTETQVTAKSVEVDMAQASEAPVVEAPAVVKAETKVETSANDVTAVETQ
EVETKPVETKATEADAPKTVEVKIDVAPVVEAPVASVAVETEVGNAPVVESPAVTPAAPK
VEAAKVEVAKTETAVEPSVAPSVEVKEAIKAAASAPMAKPAAIAKPQATVQVAPTTVNPQ
ITDALVVNKPKAASRFGSMVSSDMTKPVVEVREQVAVPKGREYENTATEEPTAKIKLTNG
AESDMARP
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcgcgatgtttgatgacctctatttaaagaagaatgacgtcatcatgaaa
cgtatgttaatcaatgcaactcaatcagaagagttgcgtgttgcccttgttgatgggcaa
caactgtatgatctagatattgaaagtccaggtcatgagcaaaaaaaatcaaacatttac
aaaggtaaaattacccgcgtagaaccgtctttagaagccgctttcgtcgactacggtgcc
gatcgtcacggctttttgccactgaaagaaatcgccagagaatatttcccgaaaggatat
tcgttccaaggtcgcccaaatatcaaagaagtggtcagtgaaggacaagaagttattgtc
caaattgacaaagaagaacgcggcaataaaggcgcagccttaacgaccttcatcagcctt
gcaggctcttacttagtattaatgccaaacaacccacgtgcaggcgggatttctcgtcgt
atcgaaggtgatgagcgtactgagttaaaagaagcgatggccgatttggaagtgccagcg
ggcatgggtcttatcgtacgtactgccggtgtgggtaaagaatctgccgagttaaagtgg
gacttaaaagttctgcagcaccactgggcagcaatcaccgaagcttcacaggttaaaggc
gctcctttcttaattcaccaagaaagtaacgtgatcgtgcgcgctattcgtgactactta
cgtcgtgatgtgggcgagatccttatcgaccatccacgtattttcgaagaagctaagcaa
catatcgccttagttcgccctgatttcgttgagcgcgtaaaactttacgaagccgaagtg
ccgttattcactcacttccaaatcgaatcacaaatcgaatctgccttccaacgtgaagtg
cgtctgccatctggcggttcgattgttatcgacccaactgaagctttaacctcaatcgat
atcaactctgcccgtgccactaaaggcggcgatattgaagagacagcactgaacactaac
cttgaagccgccgatgaaattgcccgtcaattacgtctgcgtgacttaggtggcttagtg
gttatcgactttatcgatatgacgcctgtgcgccatcagcgtgaagttgaaaaccgctta
cgtgatgctgtgcaccatgaccgcgctcgcgtgcagttaggtcgcatctcgcgttttggt
ttgatggaaatgtcgcgtcagcgtctgcgtccttctttagaagaatctgctgcgcatatc
tgccctcgctgtcatggccaaggcacgattcgcagtactgaatctttagcactgtcgatt
ttacgtttgatggaagaagaagccatcaaagagaacacctcacaaatcgaagcaattgtg
cctgtggatgtggcggctttcttgttaaacgagaaacgcaaagccattcgcatcacagag
caacgtcacgatgtcgaagtatatgtgatacctgatgcgcacatgatgacgccagattat
cgcgtgatccgtcaccgtagtgatgatgaaatcagcgaatcgagctataagcgtatcgaa
cagcctgaagctaaattgtatgagccacgtaaactggaacgtaccgcagcgcctattccg
gcattaaaagggtttgccgcgccacagaaagtggaacaagccccatcaccaacggtgaaa
gttgaagcgccacaaccaggtttcttcagcaagcttgtgagtgcaatcagtgctatgttt
gcaccaagcgaaaaagcagaacccgtaaaagttgttgaaactaaaacaaccgataccagt
gcagctaacgctaaccgccgtaaccgtcgcaacgatactcgccgcccacgtaatgcccaa
gatgccgacaaagcaaaagaaggcactcgtgagccacgcagccgtaattcgaaaaaaccg
gccgatgcagcggtaaatacaagcgctcaagaacgtcctgttcgtgagaaagaagaaact
aaacgtccagcgcgatccgaacctaagccacgtgtacaagcaccaaaagacgtggttgct
gacgtagaagccgatgcacctaagcaagaagtcgcccgtgaacgtcgtcaacgtcgtaac
atgcgccgtaaggtgcgtatcgataatggccataacacgccagataatgctattccaatt
gcaccagaagatgccgctgaagtattagctgagattgctgccgttaacgccgcggcggcg
agcactatcagtgttgacactaaaactgaagttgtccaagcaccaactgaaacaaaagca
ccaagaacacgtcgtcagcctcgtaaagaagcggcacctgctcaagaagctgctgaaaat
gttgcggtagaagagaaagcggtgagctctgcagtaactgaaaccccagcggttgatgct
gttaagactgaagaacaggctgaagtggttacagctgatgttacagcacctatggatgcg
atatcgcaagataacgacgcaattgatactgaaagcgaaactgctgatgatcaagcaaaa
cgcgagcaaagagatggtcaacgtcgtagccgtcgaagcccgcgtcaccttcgtgcagcg
ggtcaacgccgtcgtcgcgacgaagatgaccaaggtacatcaacgccagcgcaattcatc
cctaacgatgaattgggtgctaaccaagagtatccaagcgaagtcgccagtgtccgtgta
gaagcgccagtcgtcgcaactaaaacagatgccgtgactgaaactcaagtaactgctaaa
tccgttgaagtagatatggcacaagcaagcgaagcacctgttgttgaagctcctgcagtc
gttaaagctgaaacgaaagttgaaacgtcagcaaatgacgttacagcagtcgaaactcaa
gaagttgaaactaagccagttgagactaaagccactgaagcggatgcgccaaaaacggtt
gaagtgaaaattgacgttgcaccagtcgttgaagctccagtagccagcgttgcagtagaa
accgaagtgggtaacgcccctgtagttgaaagcccagcggttacaccagctgcgccaaaa
gttgaagcggctaaagttgaagtggctaagactgaaactgctgtagagccaagcgttgca
ccaagtgttgaagttaaagaagcgattaaagctgcagcctctgctccaatggcaaaacct
gctgctatcgctaagcctcaagcaacagtgcaagtggccccaacgacagtgaatccgcaa
atcactgacgcccttgtagtcaacaagccgaaagccgcaagccgttttggttctatggtg
tcttcggatatgaccaagcctgtagttgaagtgagagagcaagtggcagtgcctaaagga
cgcgagtatgagaatactgcaaccgaagagcctaccgccaaaattaaactcactaacggt
gctgagtcggatatggctcgtccataa
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