Shewanella baltica OS185: Shew185_2047
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Entry
Shew185_2047 CDS
T00571
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sbm
Shewanella baltica OS185
Pathway
sbm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Shew185_2047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbm03400
]
Shew185_2047
Enzymes [BR:
sbm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Shew185_2047
DNA repair and recombination proteins [BR:
sbm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Shew185_2047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABS08189
LinkDB
All DBs
Position
complement(2449867..2453688)
Genome browser
AA seq
1273 aa
AA seq
DB search
MSEQIQLNAAALHSAPQALDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGIAAP
LTCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLTIADPFVQALYDNTPESERAIAL
RRFDLALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSEFLHHAVRDFWREA
CYPLPDYLAQIIAKEFGEPDGLVKQLRPLLGASQAKPLKPALKFDALALSLRQSLERFKL
AWPRGRDGLLALLHGLPLNGTRFGKATDKYPKLAAMFDALDNWLAFGHGLPPLKELEALS
LSELKLNKGGVIPSVSEAPLMDHMEQLATLIAAIKPAFLYSAKLGISERFAQQKQQKNVL
TPDDLLTTLASALHANNETLPKAVATRFPVALIDEFQDTDPLQFAIFSGIYQGRYSFEQQ
GVDTTENKLSLLMIGDPKQAIYAFRGADIHTYIEARHHTQAHYHLDTNYRSSANMVAGVN
HLFSQHNDPFISQSIPFDSVKTPSSAKGKTLTEKTANPAALRLRLLSESAENGLNKTTAR
HLLAEDAAAEITRLLTDAANGECHSPKGALIAKDIAILVRDRNEAAVMKTALSKRHIGAV
FLSRDSVFDTLEAREMALILRSLANPKDERALRSALATALLGYSAEQIHAFNQDEEHRQL
LLEQFFNLHQVWQKRGIMPALLSLANSTKLIDRLLHSASTQTDAQEQDATNGERRLTDFR
HLAELLQQKATELDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGLEY
PVCFVPFVSLARDNRRRPTPMLYHRTNDAGEQELVWDIEGTDEGWERAKQETLAEDLRLL
YVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGIGDSECDFARICNAAQQLAQ
DVEAISIDKVPDDIDERPLPLSQDIAQILSAKTLTRQYSTPWRVGSYSGLVKNTSHGKAA
PGADDETLGTLEYMAAQTLSIPDEPSHELQDGMLNRFNFERGANAGSFMHLVLEEIDFTQ
ADRDLPLQLPKAMLKYGIAPEWQTVLHTWYLDVLHAPLGLMPTTMSSTTVPTTMPSTSAF
ENNSKTAKPEHPGLCLAKLSPQDTLVEMEFYLPLSELKDTELNALLQQFGYESTLKFDDL
KGMLKGFIDLTFEYQGKYYIADYKSNHLGDNINAYHQSALQSAITDHRYDLQYILYSLAL
HRYLSLRLPSYDYDSHIGGCYYLFLRGMSAQYPGYGIYYDKPPKALILALDSLFNDNLFH
SGLAGAIDTGVTA
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacagattcagttaaacgcagcggcgttacattcagcaccacaggcgcttgat
ccactcacattgccctttggcggtagtcgtctgattgaggccagcgcaggcactggtaaa
acctacacgatttcaggtctttatttacgcttattgcttggtgatggcatagcagcgccg
ctgacctgtgagcagattctcgtggttaccttcaccaatgcggccaccgaagagctaagg
gatcgtattcgtcggcgtattcaagtcgcctttaagtgcttcttagggctaacgattgcc
gatccctttgtgcaggcgttgtatgacaacaccccagagagtgaacgcgctattgccctg
cggcgattcgatctcgcccttaaatccctcgatgaagcggcaatttttaccattcacggt
ttctgtcagcgaattttatcggatctcgcctttgagtcttccttgctgttcgaatcggac
tttactttggacgacagcgaatttttgcaccatgcggtgcgggatttttggcgtgaggcc
tgttatccgctgcccgattacttagcgcaaatcattgctaaggaatttggcgagcccgat
ggtttggtcaaacaattgcggccgctccttggcgccagtcaagcaaagcctctgaaaccc
gcgcttaagtttgatgccttggccctatcactgcgccaaagtttagagcgctttaaatta
gcttggccgcggggacgcgatggcttattggcattgctacacggtttgccgctgaacggc
acccgctttggcaaggcaacggataagtaccccaaactcgccgccatgttcgatgcgctg
gataactggctcgccttcggtcatgggttgccgccactgaaagagttagaagccttgtcc
ttgtctgagttaaagctcaacaagggcggcgtgatcccaagtgtgagcgaagcaccgctg
atggatcatatggagcaacttgccacattgattgccgccattaaaccggcgtttttgtat
agtgcgaaacttggtataagcgagcgatttgcccagcaaaagcagcaaaaaaacgtgctg
actccagatgatttgctcacgacattagcaagcgcgctacatgccaataatgaaaccttg
cccaaagccgtggcaacacgtttccccgtcgcgcttatcgatgaattccaagataccgat
ccactgcaatttgcgatcttctctggcatctaccaaggccgctactcgtttgagcagcaa
ggtgtagatactacagagaacaagctcagcctgttgatgattggcgatcctaaacaagcc
atttatgcctttcgcggcgccgatatccatacctatattgaggcccgtcatcatacgcag
gcccactatcatctggataccaactaccgctcaagcgcaaacatggtcgctggagttaac
catctgtttagccagcataatgatccttttatcagtcaatcgatcccctttgatagcgtg
aaaacgcccagcagtgccaaggggaaaaccctcactgaaaaaacagctaatcctgctgcc
ttaagactaagactcttaagcgaaagcgcagaaaacggcctcaacaaaaccaccgccaga
cacttgctcgccgaagatgcagcagcggagatcacccgtttactgacagatgcggccaat
ggcgaatgccacagcccgaaaggagctttgatcgctaaagacatcgctatcttagtgcgg
gatcgcaacgaagcggcggtgatgaaaaccgcattgagtaaacgtcatataggcgcagtg
tttttaagtcgtgacagtgtgttcgatacccttgaagcgcgggaaatggcgttaatttta
cgatctctggcgaatcctaaggatgaacgggcattgcgcagcgccctagccacggcatta
ttgggctacagcgccgagcaaattcatgccttcaaccaagatgaagagcacagacagctg
ttattagagcagttttttaacttgcaccaagtgtggcaaaaacgcggcatcatgcccgcg
ctattaagccttgccaatagcactaagctgattgaccgtttactgcactccgctagtacg
caaaccgatgcacaggagcaagatgccacgaatggcgagcgccgtttgacggattttcgt
caccttgccgagctattacagcaaaaggcgactgagcttgatggtattagcgccctgctc
aattggtatgaacagcaactgattgataacacgggaaccgatgaacagcagctgcgcctt
gagagcgagcagaatctggtgcagatcgttactatccataagagtaagggccttgagtac
cccgtgtgttttgtgccctttgtcagcctagcccgcgacaatcgccgccgcccgacgcct
atgctgtaccacagaaccaacgacgcaggtgagcaagagctagtatgggatatcgaaggc
acggatgagggttgggagcgcgccaaacaagaaaccttggccgaagacttgcgcttgcta
tatgtggcgctcactcgccctgtgtatttgtgttacttgtatatcgccaatcacagtcgt
caacttaaaaatggccttaaaagtcagctgcatgaaaccgccatcggctatctgctcggc
ataggcgactcagaatgtgactttgcccgtatctgcaatgctgcgcagcagctcgcccaa
gatgtggaagccataagtattgataaggtgcccgatgacatagacgagcggccattgccc
ttaagccaagacatagcacaaatactgagcgcgaaaaccttaacccgccaatacagcacg
ccatggcgagtcggcagttattcaggcctagttaaaaataccagccatggtaaagccgct
ccgggcgccgatgatgaaacattaggcacacttgaatatatggctgcgcaaacactctct
attcctgatgagccaagtcatgagctgcaggatggcatgctcaatcgatttaactttgag
cgcggtgctaacgcaggtagttttatgcacttagtgctagaagagattgattttacgcag
gcagacagagacttaccgctacaactgcctaaagctatgctgaaatacggtatcgcaccc
gagtggcaaacggtattgcacacttggtatctggatgtgctgcacgcgccgcttgggctc
atgccgacaacaatgtcatcaacaacagtgccaacgacaatgccttcaacatcggccttc
gagaataattccaagacggccaaacctgaacatccaggactatgcttagccaagttatcg
ccgcaggataccttggtcgaaatggagttttatttacccctaagtgaacttaaggatact
gagctcaatgcgctactgcagcagtttggctatgaatcaacacttaagtttgatgatctc
aagggcatgctcaaaggctttatcgatttaacctttgaataccaaggaaaatattatatc
gccgactataagtcgaatcatttaggcgacaacatcaatgcctatcatcagagcgcgctg
caaagtgccataaccgatcataggtacgatttgcagtacatcctctactcattggcgctg
cacagatatttgagtttacgcctgccaagttatgactacgacagccacatcggcggttgt
tattacttgttcttacggggtatgtcggctcaatatcccggctatggtatttactacgac
aagccgccgaaggcacttattctcgcgctggattcactttttaatgacaatttatttcac
agcggattagctggtgcaatcgatacaggagtcacggcatga
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