Shewanella baltica OS185: Shew185_2048
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Entry
Shew185_2048 CDS
T00571
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
sbm
Shewanella baltica OS185
Pathway
sbm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Shew185_2048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbm03400
]
Shew185_2048
Enzymes [BR:
sbm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Shew185_2048
DNA repair and recombination proteins [BR:
sbm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Shew185_2048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ABS08190
LinkDB
All DBs
Position
complement(2453685..2457497)
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AA seq
1270 aa
AA seq
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MLKLIQSNQMEVLCAHLAAYLTQPLAFARLLSNEHILVQSPGMSTWLRLEIAKQNGIAAA
LEFPLPSSFTWQLCHDLLPDVPKDNAFTKAAMTWKLMQLLPRMLQDDAFGPLRHYLGNTL
ENTPTINTADTCEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPDS
LTKSLNEDQRWQPILWRALIAFNRDELNQSHYHRANLHSDLIAALNNPDTSLAQLPQRLF
VFGISSMAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAE
LWEEKLEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNDPHSHASMLH
GVQYDILEMQTLDRVLGPDAELYQNVENRRLFKRDDQSIRVKSCHSPLREVETLHDHLLE
LLSNHADLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIADRGAAQESPLINSFL
NLLGINQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRNEQSRLKQG
VPAFEQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETA
QILALPQVGALRLAELTELLDAFYDTDEDEREQLQEIRDAIAALEQELLSAGKPLDTNSL
DTSMFVTLAQQSISGLSLSIEVLQQWFNQRLTESRVGQRYLAGSVNFCTLMPMRSIPFKI
VCLLGMNDGVYPRVQHPVGFDLMAHFGARKGDRSRRLDDRYLFLEALLSAREQLYISYIG
RSERDNSERIASMLVSELIEYCQLCYLPESLLAQSQKASSPIDPEDAEKALYNAIVSHQP
LQPFDPKLYQAAVKSDDENSSKIDGSSISKNESGIGQSYSQQWCPPNADAAGTHAGRFIG
AQTRIMLEADEQDSMPDTEAQPASVREQQQSKQVDVSALIRFFRNPAQYFFNRTLKVDLS
LNIQADDNDEPFSLNALERYMLQAQLLDDAIGQGLTEPDIELIKRLKASGSLPMQPFDDL
LLRQYQHDIKPLIGRTLFLKGEQASSHADIKLLFDLPITAGKSQQVLLQGRIDDISPKGL
VNYRPGSAHGRDVLRLYLRHLCLMAMGHTHASYLLDMGHFHALAPITAERAHALLADLLV
LFYQGQQYPLCFMPRTSLAYVSSEGEHDERLQQALPEWLDEQSQLGEGNEPHYQRLFSFP
RDFSENSFGVLAERIYRPMVSLYLKDTLAQLEEFALNDGMSQGQTPNVQATETHATAAHL
NRDSAQGEQA
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagttaatccagtccaatcagatggaagtgctctgcgcccatttagccgcttac
ctgacccaaccccttgcttttgcacgtctactgagtaacgagcatattctggtgcagagt
cccggcatgtcgacttggctgcgcctcgaaatcgccaaacaaaatgggattgctgccgca
ttggaattcccactgccgtcgagctttacctggcagttgtgccatgacttattacccgat
gtgcccaaggacaacgccttcactaaggcggcgatgacgtggaagctgatgcaactcttg
ccgcgcatgttacaagatgacgcctttgggccattgagacactatctaggtaatacccta
gaaaatacgcccaccataaataccgccgacacgtgtgaacatctcaacaccagtgatatg
acggctgacgacattaagctgtaccaactctgtggccggattgccgatatcttcgaccaa
tacttagtgtatcggcccgattggattttagcgtgggagcaaaacgagcatcccgactca
ctcaccaaatcgctgaatgaagaccaacgctggcaacctattttatggcgcgcgctcatt
gcctttaaccgtgatgagcttaatcaaagccattaccacagggctaacctgcacagtgac
ttgattgccgcgctgaataaccccgacacgtcactcgcccaattgccacaacgcttattt
gtgtttggcatttcctcaatggcgccgcaaacccttgaggtgctgtaccatctggcaggc
cgtatcgatgtgatcgtgcttggtttaagcccgtgtcaacactattggggcgacattgtt
gatccccgtaatcgtgcccgcatggcggtgcaatatgcgggtaaacgccaattagccgaa
ctgtgggaagaaaaactcgaagtgggcaatccgctgcttgccaataacggcaagatgggc
cgtgaattactcgatatgctgcttgagctccccgccgaacactgcgactttggcgacgat
gtgtattgtgaaccctgcgacgatcccaacgatccacacagtcatgccagcatgctccac
ggggtgcaatacgatattttagagatgcaaaccttagacagagtgctagggccagatgcc
gagctgtaccaaaatgtcgagaacagacgcctgtttaagcgcgacgatcaatccattcga
gtcaagagttgtcacagcccactgcgggaagtcgaaaccctgcacgatcacttgcttgag
ttactcagcaaccatgccgacctgacacccaaagacatagtggtgatgatgcccgatgtc
gccgcctacgcgccctacatcgatgccgtcttctcggcgaagcaaggcctgcattacatt
ccctacgccattgccgaccgcggcgcggcgcaggaatcaccgctcatcaatagctttttg
aatttacttgggattaatcaaagtcgttttggtctgaccgacattttgagcatactcgaa
gtacccgccattttgcgccgtttccagctcgatgacgatgaattgcaactgatccgccgc
tggttagatgaagcgggcgtgcgctggggccgaaatgaacaaagccgcctaaaacaaggt
gtgccagcgtttgagcaaaactcctgggcctttggtattaaaaggctgattttaggctac
gccttgagtgacgatgcgccgctgtaccaagaccatctgatcgtgactggcatcgaaggc
caatcggcgcaggcattaggtaagttactcaattttattgaagtactcgatgaaacggcg
caaatactcgccttaccgcaagtgggcgccctgcgcttagcggaattaactgagttgctg
gatgccttctacgacacagatgaagacgagcgcgagcagttacaggaaatccgcgatgcc
attgccgccctagagcaagagttactatcagcgggcaagccattagatacaaactcgtta
gatacaagtatgttcgtgacactagcccaacagagcataagcggactgagcctcagtatc
gaagtgctacaacaatggtttaatcaacgcttaaccgaatctcgggtcggccagcgttat
cttgcgggaagcgtgaacttttgtaccttgatgccgatgcgctcgatcccctttaagatc
gtgtgtttactcggcatgaacgatggggtttatcctagggttcagcatcctgtcggcttt
gatttaatggcgcactttggtgcccgtaaaggcgatcgttcccgccgcctcgatgacaga
tatttgtttttagaagccttattgtcggcgcgcgagcaactgtatatcagctatatcggt
cgcagcgaacgggataactctgagcgtatcgcctctatgctcgtctctgaactgattgaa
tattgtcagctgtgctatttgcctgaatcgctattggctcaatcgcagaaagcttcaagc
cccatagacccagaagatgctgaaaaagccctctataacgcgatcgtcagccaccagccg
ctgcaacccttcgatcctaagttgtatcaagccgcagtaaaaagtgatgacgaaaatagc
tcaaaaatagatggctcaagcataagtaaaaatgagtcaggcataggccaaagttacagc
cagcaatggtgtccgcccaatgcggacgctgcgggcacacatgcaggccgctttatcggc
gcgcaaactcgcatcatgctcgaagcggatgagcaagactcaatgccagatacagaggca
cagcccgcttctgtgcgcgaacaacagcaaagcaagcaagtggatgtgtctgccctgatc
cgtttctttcgaaatccggcgcagtacttcttcaaccgaacgcttaaagtcgaccttagt
cttaatattcaggcagatgataatgacgagccctttagcctaaatgccctagagcgctat
atgttacaggcccagttactcgacgatgccataggccaaggtctgactgagcccgatatc
gagctgattaaacgcctcaaagccagcggcagtttgccgatgcagcccttcgatgatttg
ctgctacgccaatatcagcacgatattaagcctttgattggcagaaccttgttcctcaag
ggagaacaagccagcagtcatgcggatattaaactcctgtttgacttacccatcacggcg
ggtaaatcccagcaagtgttactgcaaggccgtattgatgacatcagccctaagggatta
gtgaattaccgtcccggtagcgcccacggccgcgatgtgctgaggttataccttcgccac
ctgtgtttaatggcaatgggccacacacatgcaagctatctactcgacatggggcatttc
cacgccttagcgccaatcacagctgagcgcgcccatgcgttactggccgatttgctggtg
ctgttttatcaaggtcagcaatacccactgtgttttatgccgcgcacctcactggcctac
gtcagcagcgagggtgagcacgatgagcgtttgcagcaagcgttacctgaatggctggat
gagcagagtcaattaggtgaagggaacgagccccattaccaacgcttattcagttttccg
cgggatttctctgagaatagctttggcgtattagccgagcgcatctatcgccctatggtg
agtttatatctcaaagatacgctggctcagcttgaggaatttgcgctgaacgatggcatg
agccaaggccaaactcccaatgtacaagcgactgaaacacacgctactgcagcacattta
aaccgcgatagcgcacagggagagcaagcatga
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