Shewanella baltica OS185: Shew185_2113
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Entry
Shew185_2113 CDS
T00571
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
sbm
Shewanella baltica OS185
Pathway
sbm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Shew185_2113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbm03400
]
Shew185_2113
DNA repair and recombination proteins [BR:
sbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shew185_2113
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Shew185_2113
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
UVR
ResIII
DEAD
AAA_22
AAA_30
DUF724
HEM4
Ish1
DUF2963
AAA
Kinesin
DUF7842
Motif
Other DBs
NCBI-ProteinID:
ABS08255
LinkDB
All DBs
Position
2521522..2523528
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AA seq
668 aa
AA seq
DB search
MSESVFQLESQFAPAGDQPTAIAKLVDGLEAGLACQTLLGVTGSGKTFTIANVIQKLGRP
TIIMAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHI
EQMRLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDVMGQRDILIRLSEL
QYKRNDIELQRGTYRVRGEVIDVFPADSERNAIRVELFDDEIERLSEFDPLTGHIIKRIA
RTTVYPKTHYVTPREKIIAATEFIKEELRERKQYLLDNNKLIEAQRIHERVQYDVEMMVE
LGYCSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKT
TLVEYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSVYELEKSEGEIAEQVVRPTGLL
DPELEVRPVGTQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSD
IDTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTI
GRAARNVNGKVILYADRITNSMAKAIGETDRRRERQRAHNLKHGITPKGVVKRITDVMDV
DDGRDSKAVYGKVAEPKSHYHKADATELSHQIDQLEKKMHEHARNLEFEQAAAMRDEVKH
LRDLLIKA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagaatctgtttttcagcttgaatcgcaattcgcccccgcaggcgaccaacctaca
gcgatagccaaattagtcgatggactcgaagcgggtttagcttgccaaaccttactcggg
gtgaccggctcaggtaaaaccttcacgattgccaatgtgatccaaaagttaggtcgcccc
acgattatcatggcgcccaataaaactttggcggcgcagctttacggcgagatgaaagag
ttctttccccataatgcggttgagtattttgtctcatactacgattactatcagccagaa
gcctatgtgcctgcatcaaataccttcatcgagaaagacgcgtcggttaatgcccacata
gagcaaatgcgcctgtcggcgacgaaggcgctattagagcgtaaagatgtggtgcttatc
gcctctgtgtcggccatttatggtttgggcgatcccgactcctatttaaaaatgttgctg
catcttcgccaaggcgatgtgatggggcagcgtgatatcttaattcgtctcagtgaattg
cagtataaacgcaatgatatcgagctacagcgcggcacctatcgcgtgcgtggtgaagtg
attgatgttttccctgccgattctgagcgtaatgccattcgtgttgagttgttcgacgat
gagattgagcgtttaagcgagtttgatccgttaaccggccatatcatcaagcgcatcgcc
cgtacaacggtttaccctaagactcactatgtgacgccgcgggaaaaaatcatcgccgcc
actgagtttattaaagaagagctgcgcgagcgtaagcaatatctactcgataacaacaag
ttaattgaagcccagcgtatccatgagcgggtgcaatacgatgtggaaatgatggtggag
ttgggttactgctcaggcatcgaaaactactcgcgctatttgtcaggccgcgcaccgggg
gaagggccgccaaccttactcgactatttgcccgctgacggtctattaattatcgacgaa
tcccatgtgactgtgccgcaaatcggcgccatgtacaaaggtgaccgttcccgtaaaacc
acactggtggaatacggtttccgcttaccatcagccttagataaccgaccgctcaagttt
gaagagtttgagcaattgatgccgcaaaccatttatgtgtcggcgacaccgagtgtctac
gagctggaaaaaagcgaaggtgagattgccgagcaggtcgtacggccaacgggtttactc
gatcctgaattagaagtgcgtcctgtcgggactcaagtggacgatttattgtccgagatc
gccaagcgcgtcgctgttaacgagcgggtgttagtgacgacgctgaccaagcgtatgtcg
gaggatttgaccgaatacctcgacgaacatggtgtaaaagtgcgttatttgcactcggac
atagacacagtcgaacgggtggagatcatccgcgatctgcgtttaggcaagtttgatgtg
ttggttgggatcaacctattgcgtgaaggcttagacatgccagaagtgtcactggtgtgt
attttagatgcggataaagagggcttcctgcgctcagaacgctcgcttatccaaaccatt
ggccgcgccgcgcgtaacgttaatggcaaagtcattctctatgctgatcgcattaccaat
tcgatggcgaaggccattggtgaaactgaccgccgacgtgaacgccagcgcgcgcacaac
ttaaagcacggtatcacccctaagggcgtggttaaacggatcaccgatgtgatggatgtc
gatgacggccgcgacagtaaagctgtgtatggcaaagtggctgaacctaagtcccattac
cataaagccgatgcgactgagttgagccatcaaatcgatcagcttgagaagaagatgcac
gaacatgcgcgtaacttagagttcgaacaagcagcggcgatgcgtgatgaagtcaagcat
ttgcgggacttgttgatcaaggcctag
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integrated database retrieval system
