Shewanella baltica OS185: Shew185_3522
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Entry
Shew185_3522 CDS
T00571
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sbm
Shewanella baltica OS185
Pathway
sbm03410
Base excision repair
sbm03430
Mismatch repair
sbm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Shew185_3522
03430 Mismatch repair
Shew185_3522
03440 Homologous recombination
Shew185_3522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbm03400
]
Shew185_3522
DNA repair and recombination proteins [BR:
sbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Shew185_3522
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Shew185_3522
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Shew185_3522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Kbp-5
Motif
Other DBs
NCBI-ProteinID:
ABS09649
LinkDB
All DBs
Position
complement(4186257..4187990)
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AA seq
577 aa
AA seq
DB search
MSPLIHKIVRRPTVDDSHLPAHLSPLLKQLYARRGALTHECELVLKGLLRPETMKGLPEA
AALIADAMQANKSILIVGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPE
IVAVAASKQAEMLITVDNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQP
DCPFASKSIAGVGVAFYLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSL
DANNRILVEAGLQRVRAGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEM
ALGVETLLCEDMMYARRMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIAL
FQEDWHQGVIGILASRIKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHP
GLIIKFGGHAMAAGLSLKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLE
MAQLLRNAGPWGQAFEEPLFDGYFTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLH
TWPDATIHHARIVYKLDVNEYRGNFSLQLMVEQIEAM
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcccttgatccataagatagtccgtcgcccaaccgttgatgatagccatttacct
gctcatctttcgccgctattgaagcagctttacgctcgccgcggtgcgctcacccacgaa
tgtgaacttgtccttaagggtctattaagacctgaaaccatgaaaggcctgcccgaagct
gcggcgcttattgccgatgccatgcaggcgaataagtcgattctgatcgtcggtgatttt
gatgccgatggcgcgacctcaaccagcgtatgtatgttggcgctacggatgatgggggcg
gtgaaagtggactatttgatccccaatcgcttcgattacggttacggcttaagccctgaa
attgttgcagttgcggcgtctaaacaggctgaaatgctgatcactgtcgataacggtatt
tcatcgattgatggcgttgctgcggccaaagcctttggtatgcaagtggtgattactgac
catcatttacccggacacgagttgcctgctgccgatgcgatagtgaatccgaatcaaccc
gattgcccattcgcgagtaaatcgattgccggtgtcggtgtcgccttttatttgatgaca
gcattaagggctgaactgcgaacgcgaaactggtatcaaacgcgcggtattgctgagccc
aatttagggacgctgctcgatatcgttgcccttggcaccgttgccgatgtggtatcgctg
gatgccaataatcgcattttagtcgaagcgggtttgcagcgcgtgcgagcgggccgctgc
cgtgtggggattaccgcactgcttgaagtggcgaagcgaaatcctgcgcgcattgttgca
tctgattttggttttgccgtgggtccgaggcttaatgccgcaggccggctcgatgaaatg
gcgctaggggtcgaaaccttactctgtgaagacatgatgtacgcgcggcgtatggcggcc
gagctcgatgggttaaaccaagagcgtcgtgagctggaagtcggcatgcagcaggaagcc
ttaaaaagtctcgagcacttaaagctcaacgaagacgagctaccttggggcattgcgcta
tttcaagaggattggcaccaaggcgtcattggtattttggcctcgcgcattaaagacaaa
taccacagacccgtgatcgcctttgccgatgccggcaatggtcaaattaaaggctcggcg
cgttcgatcaaaggcttgcacatgcgcgacctactcgagctggtcaacacgcgccaccca
gggctgattatcaagtttggcggtcatgcaatggcggcgggcttatcactcaaggcgggc
agttttgcgacatttgccaaagcctatgatgatgcggtgcgtgaactgctcaaacctgaa
ctgctaactggcgagctgtggtccgatggtgaactcactcccacggaactgaatcttgag
atggcccagttactgcgcaatgccgggccttggggacaagcctttgaagagccactgttt
gatggctattttacgatagtgcagcaacgcctcgtcggcgagcgtcaccttaagctcgtg
ctcgaaactcagtgcggcactgtgatgctcgatgcgattgcttttaatgtggatttacac
acttggcccgatgcgaccattcaccatgctcgtatcgtttataagcttgatgtgaatgag
tatcgcggtaatttctcgctgcaactcatggttgagcagattgaagctatgtag
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