Shewanella baltica OS185: Shew185_3527
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Entry
Shew185_3527 CDS
T00571
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
sbm
Shewanella baltica OS185
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sbm03009
]
Shew185_3527
Enzymes [BR:
sbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Shew185_3527
Ribosome biogenesis [BR:
sbm03009
]
Prokaryotic type
rRNA helicases
Shew185_3527
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_11
AASDHPPT_N
Cas3-like_C_2
7TM_GPCR_Sra
Motif
Other DBs
NCBI-ProteinID:
ABS09654
LinkDB
All DBs
Position
4192853..4194112
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AA seq
419 aa
AA seq
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MQFEDFQLDPSLLESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSL
QHLIDFPRRFAGQARILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEAL
AGNVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQ
NMLFSATLEGGGVQRFAREVLNDPIEIDVEAPRSEKAKIHQWIHLADDKEHKFALLCHLL
RQEDVKRTIVFVKTRDIVSSLEGQLLKVGIACAFMRGDMEQKKRFQALSRFTKGEVNVLL
ATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI
ERYIEQPLKRRVIEELRPKNKEARTPGKKKAKVKAKEAAKKTSKKEAAKKASKIARKKK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaagatttccagcttgaccctagcttattagagtcgcttaatgccatgggg
catcattcacccaccactattcagcaagaaactatcccttatgccctagagcaaagagat
attctcgcgcgcgccccgacaggaacaggtaaaacagcgagctttttactgccatcgttg
caacatttaatcgacttcccccgccgtttcgctgggcaagcacgtatcctgatcctcacg
ccaacccgtgagttagccagccaaatccaccgttatgcgtgtcacttagccacaggccaa
ggtttagacatagcgatcgtgactggtggtgtgccttacggaccacaagaagaagcctta
gcgggcaacgtcgatattctggtcgcgacccctggccgcctgatggaatatttagacaaa
ggcaatttcaacgcccaagaagtcgatatcttaattatcgacgaagccgaccgcatgcta
gacatgggcttctcttctgtggtgcaagcgattgctatcgaagcccaaggccgcaaacag
aacatgctgttctctgccaccttagaaggcggcggtgtacaacgttttgcccgtgaagtg
ttaaacgacccgattgaaatcgatgttgaagcacctcgcagcgaaaaagccaagatccac
caatggatccacttagccgatgataaagagcataaatttgccctgctatgtcatctgctg
cgccaagaagatgtgaaacggactatcgtgttcgtaaaaacccgcgacatcgtttctagc
ttagaaggccagttacttaaagtcggtattgcctgcgccttcatgcgtggcgatatggaa
cagaaaaaacgtttccaagctttgagccgctttaccaaaggtgaagtgaacgtcttgctg
gcaaccgatgtggctgcacgcggtatcgatatcgacgatatcacccatgtgatcaacttc
gacatgccacgctctgccgatacctatattcaccgtatcggtcgtactggccgcgctggc
gccaaaggtactgcgatttcgttggccgaagcccacgatatgcgtatcgtcggtaaaatc
gagcgttatatcgagcaaccgttgaaacgccgcgtgatcgaagagctgcgtcctaagaac
aaagaagcgcggacaccgggtaagaaaaaagccaaagtgaaagcgaaagaagcagcgaag
aaaaccagcaagaaagaagcggcaaagaaagcgagtaaaatcgcccgcaagaagaagtaa
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