Shewanella baltica OS185: Shew185_3745
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Entry
Shew185_3745 CDS
T00571
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sbm
Shewanella baltica OS185
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbm03016
]
Shew185_3745
Enzymes [BR:
sbm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Shew185_3745
Transfer RNA biogenesis [BR:
sbm03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Shew185_3745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ABS09869
LinkDB
All DBs
Position
4452750..4453295
Genome browser
AA seq
181 aa
AA seq
DB search
MQQRLFLGFAPTAAQMTRLSDVQQQLICHLNPEAKAVSVSNMHLTLCFLGQVDDEQRIAL
LDAIDCLAKPRFSVQLNQLDLWPNAQVCCLKGDEVEPPLAQLAKQTQAIAGRLQLHSSEH
HFCPHISLFRKAKQWTLDESALLQLKDMNTLTLTPERLHLYHSKNTSTGVEYHILHSWTL
D
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaaaggctatttctcggcttcgcgcctaccgctgcacaaatgacaaggctgagt
gatgtacaacagcagctaatttgtcacctcaatcctgaggcgaaagcggttagcgtcagt
aatatgcatttaacgctctgctttttagggcaagttgacgacgagcaacgcatcgcactc
cttgatgcgattgactgcttagctaagcctagattcagcgttcaacttaaccagctcgac
ttatggcccaatgcccaagtctgttgcttgaaaggcgatgaagttgagccgccgttagcg
caattagctaagcagacgcaagcaatcgcaggccgcctgcaattgcatagcagtgaacac
cacttttgcccgcacatcagtttattcaggaaggcaaaacaatggacgctagatgagtcg
gcgttattgcaactcaaggacatgaatacgctaacgttaacgcccgaacgtttgcattta
tatcattcaaaaaacacaagcacgggtgtggaatatcacatcctacattcttggacgctc
gattag
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