Shewanella baltica OS185: Shew185_3892
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Entry
Shew185_3892 CDS
T00571
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sbm
Shewanella baltica OS185
Pathway
sbm03420
Nucleotide excision repair
sbm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Shew185_3892
03430 Mismatch repair
Shew185_3892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbm03400
]
Shew185_3892
Enzymes [BR:
sbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Shew185_3892
DNA repair and recombination proteins [BR:
sbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shew185_3892
MMR (mismatch excision repair)
Other MMR factors
Shew185_3892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
ABS10016
LinkDB
All DBs
Position
complement(4615962..4618130)
Genome browser
AA seq
722 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVAGTNMGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQV
RLIKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPLEQNLLKIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQDRFKHILVDEFQDTNAIQYAWIRVLAGQT
ANVMIVGDDDQSIYGWRGAQVENLHRFLKDFPTATTIRLEQNYRSKGNILKASNALIANN
PERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRSNAQS
RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKDDDAAFERVVNTPPRGIGD
RTLDILRSTARQHELTLWQASVRLLDEKVLAGRAANSVRGFMDLIMTMREDTQDMVLYRM
ADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFELPEELEDMGELNGFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPSKMALEEGDRLDEERRLCY
VGMTRAMEKLYITYAESRRIYGREDYARPSRFIKEIPPQYVDEIRLKAQVSTPMANNRFS
TQKSAATNDTGFNVGQRVNHPKFGEGKVTNFEGSGAQGRVQVSFTDFGSKWLVVAYARLE
AL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactagacggcctgaatgataagcagcgcgaggctgtcgcggca
ccgcaatctagcatgttagtgttggcgggcgcgggcagtggtaaaactcgggtgttgacc
caccgcattgcgtggctgatgcaggttgaacagcagagtccttactcgattcttgcggtg
acatttaccaataaagctgcggctgagatgcgcgagcgagttgaaaaagtcgctggcacc
aatatgggccgcatgtggattggcactttccacggcttggcgcatcgcttattacgcact
cacttccaagatgcgggtttaccgcaaagcttccaaatcctcgattctgacgatcaagta
cgcttgatcaaacgtattctaaaaagcctgaatttggatgagaaacaatatcctccacgc
caagctcagggttatatcaatggtaaaaaagaccaaggattacgccctaaacatatcgat
gcgggcggttttccgcttgagcaaaatctgttaaaaatctatcaggtttatcaagagtct
tgcgaccgcgctggtttagtcgattttgccgaaatcctattacgtgcccatgagttatgg
ctcaataagccgcacttgttggcccattatcaagacagattcaagcatattttggtggac
gagttccaagataccaacgccattcaatacgcgtggatccgcgtgcttgccggtcaaact
gccaatgtaatgatagtcggtgatgacgaccaatcgatttacggttggcgcggtgctcag
gttgaaaacctacatagattcttaaaagatttcccgacggcgaccacgattcgcctcgag
caaaactatcgctcgaagggcaatattcttaaagcgtccaacgccttaatcgccaataac
cctgaacgtatgggcaaagagttgtggacggatgaagccgatggcgatccaatttcgctc
tattgcgcctttaatgaaatggacgaggcgcgctttattgtcggtcggattaatgattgg
cacgaaaagggcggcaacctcagtgattgtgcgattctatatcgttctaacgctcagtcg
cgggtattggaagaagccttattacacaaaggcttagcttatcgaatctacggcggttta
cgcttcttcgaacgtcaagaaattaaagatgccatgggttacctacggctgatcaataac
aaagacgacgatgcggcttttgagcgtgtggttaacacaccgccccgtggcattggcgat
cgcactttggatattttgcgctcaactgcgcgtcagcatgaattaaccttgtggcaggca
agtgtgcgtttgctcgacgagaaagtgctcgcgggccgcgcagcaaattctgtgcgtggt
ttcatggacttaatcatgaccatgcgtgaagacactcaagatatggtgctgtatcgcatg
gccgatactgtgatccaagcttcgggtcttaaggccatgtatgaggccgaaaagggtgaa
aaagcccacgctagaatcgaaaacttagaagaactcgtcacggcggcacgtacttttgag
ctaccagaagagctggaggacatgggcgaacttaacggtttcctctcccacgcggcgctc
gaagcgggcgaaggccaagccgatgcctttaccgatgcggtgcagctaatgacgctgcat
tctgccaaagggctagagttcactatggtgttcatggcgggggtcgaagaagggatcttc
ccgagtaaaatggcgctcgaagagggcgatagactcgatgaagaacgccgcctctgctat
gtgggcatgacccgcgccatggaaaaactctatattacctatgcggaatcgcgccgcatt
tatggccgcgaagattacgcgaggccgtcgcgttttatcaaagagatcccaccgcaatat
gtggatgaaatccgcctcaaggcgcaggtttcaaccccgatggcgaataatcgttttagc
acccaaaagtcggcagccacaaacgatacgggtttcaacgtcggccaacgagtcaatcac
cctaaatttggtgaaggcaaggtgaccaactttgagggcagcggcgcccaagggcgagta
caagtgagctttactgactttggcagcaagtggttagtcgtggcttacgctcgtttagaa
gcactgtga
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