Shewanella baltica OS185: Shew185_4345
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Entry
Shew185_4345 CDS
T00571
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sbm
Shewanella baltica OS185
Pathway
sbm03030
DNA replication
sbm03410
Base excision repair
sbm03420
Nucleotide excision repair
sbm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shew185_4345
03410 Base excision repair
Shew185_4345
03420 Nucleotide excision repair
Shew185_4345
03440 Homologous recombination
Shew185_4345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbm03032
]
Shew185_4345
03400 DNA repair and recombination proteins [BR:
sbm03400
]
Shew185_4345
Enzymes [BR:
sbm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Shew185_4345
DNA replication proteins [BR:
sbm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Shew185_4345
DNA repair and recombination proteins [BR:
sbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Shew185_4345
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shew185_4345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Prok-E2_E
Motif
Other DBs
NCBI-ProteinID:
ABS10459
LinkDB
All DBs
Position
5180413..5183220
Genome browser
AA seq
935 aa
AA seq
DB search
MLSAIKVIDKRKILMPTVAKNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNML
RSLLTRYQPSHIAVVFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRIIRALGLPL
ISISGVEADDVIGTIARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVA
IKFGVGPDRIIDLLALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGF
RGSKTMAAKIIENADMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKR
WLAEVLDNKITANTSIDAASETQEDSTPVEAIATQYDCILTEAELDAWIAKLKKANLMAV
DTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVALEKLRPLLEDPKL
KKVGQNLKYDISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFE
EIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLI
QVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKL
GYPITKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGR
VHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIM
AHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLA
RQLDIPRHEAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAM
RRQGAERAAINAPMQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKA
EALKKTICTLMAQAADLDVELLAEAGIGNNWDEAH
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgcttagcgccatcaaagtcatcgataaacgaaaaatacttatgccaaccgtcgctaaa
aacccacttgtgcttgtggatggatcttcttatttatatcgcgcttattatgcgcctcct
cacctgacaaactcaaagggcgaagcaaccggtgccgtttatggcgtagtgaatatgtta
cgcagcttgctgactcgctatcagccgagccatatcgcagtcgtattcgatgccaagggc
aaaaccttccgcaatgacatgtacagcgagtacaaagcacagcgcccacctatgcctgat
gacctacgttcgcaaatcgaacctttacaccgcattattcgtgcactgggtttaccactg
atttcgatttccggcgtcgaagccgatgacgtgatcggcactattgctcgccaagccagt
ttagaaaaccgtgcagtgcttatcagcactggcgataaagacatggcgcagttagtcgat
gagaacgtcacgctaatcaacaccatgacagacaccataatgggcccagaagaagtcgcg
attaaatttggtgttggtccagaccgtatcatagatttgctcgcgctgatgggcgacaag
gccgataacattcccggcttacccggcgttggtgagaaaactgcgctcgctatgctcaca
ggagccggcagcgtgagtaatttattagcggaacccgaaaaagtcgccgagctcggcttt
aggggttctaaaaccatggcggcgaagatcattgaaaatgccgatatgctcaagctttct
tacgaactcgccaccattaaaaccgatgtcgaacttgagcaagactggcacgaactcacc
atcaagcccgcagacaaagatgaactgatcaaatgctacggcgagatggagtttaagcgt
tggttagccgaagtcttagataacaaaatcactgcaaatacctcaattgatgcggcatcc
gagacacaggaagactcaactccagtcgaagcgattgcaacgcagtacgactgcattctc
acggaagccgaattagacgcttggattgctaagcttaaaaaagccaacttgatggcggta
gataccgagaccaccagcttagattacatggtggctgaattagtcgggatctccttcgcc
gttgaggcaggaaaagcggcttatctgcctttgacccatgattatgttggcgcaccgact
caaatcgataaaaccgtcgcgctagaaaaactgcgtccactgcttgaagatccaaaactt
aagaaagtcggtcaaaatcttaagtacgacatcagtatcttagccaatgcgggtatcaaa
ctgcagggcgtcgctttcgatactatgctcgaatcctatgtcttcaactcagtggcttcg
cgccatgatatggatggcttagcactcaagtacttaggccataagaatatcagcttcgaa
gaaatcgctggcaaaggtgcaaaacagctgaccttcaaccaaattccactggaaacggct
gcgccttatgcggccgaagatgccgacatcaccctacgtttacaccaacatttgtggcca
agactcgaaaaagaagcggaactggccgctatgtttaccgaagtcgaattgccgctgatc
caagtattgtcggatattgaacgccaaggggtattaatcgatagcatgttactcggccaa
caaagcgacgagctagcgcgtaaaatcgataccttagaagaaaaagcctacgacattgcc
ggtgagaaatttaaccttggctcgcctaaacaactgcaagtattgttttttgaaaagcta
ggttatccgatcaccaaaaagactcccaagggcgcaccatcaaccgcagaagaagtgttg
gtcgaattggcattagatttccctttgccaaaggtgatcctcgaacatcgcagcctatct
aaattaaagagcacttacacagataaactgccactcatggtcaatgctaaaacgggtcgt
gtgcacactagctatcatcaggccaatgcggcaacaggacgcttatcatcgagcgagcct
aacctgcagaatattcctatccgcaccgaagaaggtcgccgtattcgccaagcctttatc
gcacctgatggtcgtaaaattttggcagccgactactcgcaaatcgaactgcggatcatg
gcacatttatcccaagatgccggcttactcaaagcattcgccgagggcaaagacattcac
agagctacggctgccgaagtgtttggcactgactttgatgaagtaaccacagaacagcgt
cgccgggccaaagcggttaacttcggcttaatttacggcatgtcagcctttggtttagcg
cgtcagctcgatatcccgcgccatgaagcacaaacctatatcgacacctactttgcccgt
tatccaggcgtattacgttatatggaagaaacgcgtgcgggggctgccgacctaggttat
gtatcgactctgtttggccgtcgcctctatttacccgaaatccgtgatcgtaatgcgatg
cgccgccaaggtgctgaacgtgctgcgattaatgccccaatgcaaggcacggctgccgac
atcatcaaaaaggccatgatcaatatcgcccagtggatcaagacagaaacccaaggcgaa
atcactatgatcatgcaggttcacgatgaattggtgtttgaagtcgatgcggataaagca
gaagcgcttaaaaagacaatctgtactttaatggcacaagccgccgatctcgatgttgaa
ctgcttgccgaagcgggcattggtaataactgggatgaagcccactaa
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