Shewanella baltica OS195: Sbal195_1899
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Entry
Sbal195_1899 CDS
T00622
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sbn
Shewanella baltica OS195
Brite
KEGG Orthology (KO) [BR:
sbn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbn03016
]
Sbal195_1899
Enzymes [BR:
sbn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Sbal195_1899
Transfer RNA biogenesis [BR:
sbn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Sbal195_1899
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
TFA2_Winged_2
Motif
Other DBs
NCBI-ProteinID:
ABX49070
UniProt:
A9KYY2
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All DBs
Position
2268366..2269475
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AA seq
369 aa
AA seq
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MSAFQYVSDEASLNALVAQYKQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA
LPDLAQFWALLSDPNIIKLVHSCSEDLEVFAHYGKCQPTPLFDSQIAASLCGMGHGVGYA
KLVETCLGEVIDKGESRTDWIRRPLTEAQLSYAANDVLYLYQLYPQLEAKLSAQGRLAWL
YEEGERMTQGRLADPDLDTAYLKVKNAFQLTEIQLAYLKVLAKWRLEKALVRDLALGFVV
KDHGLIALAKKQPKSSADLFKLNDLTEQEKRIHGKDLLRVLQTADLVNLPELVDVLALKS
GYKSAFKAIKSCLVELCEQHDVPQEMLGSKRHIHEFLQWRWDKQQGDLPAVLCGWRGEIA
AESLAKLEV
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
ttgtcagcgtttcaatatgtgagtgatgaagcaagccttaatgccctcgttgcccaatat
aaacagagtaagatactcgtgttagataccgagtttgttcgtactcgtacttattatgcc
aagctaggtttgatccaagcctatgatggtaaaaccttagctttgattgatcctgtggct
ttacctgatttagcccagttttgggcgctattatcggatccgaatatcattaagcttgtg
cattcctgcagcgaagatttagaagtgtttgcccactacggtaaatgtcaacctacgcct
ttgtttgatagccaaattgccgcctctttgtgtggtatgggccatggtgtgggttatgcc
aagttagttgaaacttgcttgggtgaagtgatcgataaaggcgagtcgcgtaccgattgg
atccgccgccctttaacggaagcccagttaagctacgccgcgaatgacgtcctgtacttg
tatcagctctatcctcaactggaagcgaaactcagcgcccaaggccgtttagcttggtta
tacgaggaaggggaaaggatgactcagggcaggcttgccgatcctgatctcgacacggct
tatttgaaagtgaaaaatgctttccaactgaccgaaatccaattggcttaccttaaagtg
ctcgccaagtggcgtcttgaaaaagccttagtgcgtgatttagccctaggttttgtggtc
aaagatcatggtcttatcgcattagcgaagaagcaacctaaatcctcggccgacttgttt
aagctcaatgatttgactgagcaagaaaaacgtatccacggaaaagatttattacgtgtg
ctgcaaaccgctgatttggtcaatttacccgaattagtggatgtgttggcgttaaaatca
ggctacaaatcggcctttaaggcgattaaaagctgcttagtcgagttgtgcgaacagcat
gatgtgccgcaggaaatgctcggttctaaacgtcatatccatgagtttttgcaatggcgt
tgggataagcaacaaggggatttgcccgcggtgttatgcggatggcggggcgagattgcc
gctgagtccctagctaagcttgaggtctaa
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