Shigella boydii Sb227 (serotype 4): SBO_0405
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Entry
SBO_0405 CDS
T00301
Symbol
ybbB
Name
(GenBank) putative capsule anchoring protein
KO
K06917
tRNA 2-selenouridine synthase [EC:
2.9.1.3
]
Organism
sbo
Shigella boydii Sb227 (serotype 4)
Brite
KEGG Orthology (KO) [BR:
sbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbo03016
]
SBO_0405 (ybbB)
Enzymes [BR:
sbo01000
]
2. Transferases
2.9 Transferring selenium-containing groups
2.9.1 Selenotransferases
2.9.1.3 tRNA 2-selenouridine synthase
SBO_0405 (ybbB)
Transfer RNA biogenesis [BR:
sbo03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
SBO_0405 (ybbB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhodanese
T2SSE
AAA_16
AAA_18
AAA_23
DUF3333
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABB65114
ShiBASE_China:
SBO0405
UniProt:
Q324Z4
LinkDB
All DBs
Position
complement(423422..424516)
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AA seq
364 aa
AA seq
DB search
MQERHTEQDYRALLIADTPIIDVRAPIEFEQGAMPAAINLPLMNNDERAAVGTCYKQQGS
DAALALGHKLVAGEIRQQRIDAWRAACLQNPQGILCCARGGQRSHIVQSWLHAAGIDYPL
VEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQQQPNGVDLEGLARHRGSAFG
RTLQPQLSQASFENLLAAEMLKTDARQDLRLWVLEDESRMIGSNHLPECLRERMTQAAIA
VVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNE
LAAQLDTALTTQLTTGSTDGHLAWLVPLLKEYYDPMYRYQLEKKAEKVVFRGEWAEVAEW
VKAR
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagagacacacggaacaggactatcgtgccctgctgattgctgatacgcccatt
attgatgttcgcgcccctatcgagtttgagcaaggcgcaatgcccgccgctatcaatctg
ccgttaatgaataacgatgaacgcgccgccgttggcacctgctataaacagcaagggtca
gacgcggcgctggcgctggggcataaactggtggcgggtgaaattcgtcagcagcgcata
gacgcctggcgggcagcgtgcctgcaaaatccgcaaggtattctctgctgtgcccgtggc
ggtcaacgctcacatattgtgcaaagctggttgcatgcagcggggattgattatccgctg
gtggaaggcggttataaggcactgcgccagaccgcgattcaggcgactattgaactggca
caaaaaccgatagtgctgattggcggttgtaccggcagcggtaaaacgctgttagtgcag
caacagccgaacggtgtcgatctggaagggctggcgcgtcatcgcggttcggcgtttggt
cgcacgttacaaccacaacttagccaggcgagttttgaaaatctgctggctgccgaaatg
ctaaaaaccgacgcccgtcaggatttgcgcctgtgggtgctggaagatgaaagccggatg
atcggttcgaatcacctgccggaatgtctgcgcgagcgaatgactcaggcggcgattgcg
gtggtagaagatccgtttgagatccgtcttgaacgcctgaacgaagagtatttcttgcgt
atgcatcatgattttacccacgcgtacggcgacgaacagggctggcaggaatattgcgaa
tacctgcatcacggactttcggctattaagcgtcggctggggttacagcgctataacgaa
ctcgctgcccagctggatacggcgctgacaacgcaactcaccaccggcagcaccgacggt
catctggcctggctggtgccgttacttaaagaatattacgacccaatgtatcgctatcag
cttgagaaaaaagcggaaaaagttgtctttcgcggtgagtgggcggaagtggcggaatgg
gttaaggcgcggtaa
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integrated database retrieval system
