Shigella boydii Sb227 (serotype 4): SBO_0685
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Entry
SBO_0685 CDS
T00301
Symbol
rhlE
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sbo
Shigella boydii Sb227 (serotype 4)
Pathway
sbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SBO_0685 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbo03019
]
SBO_0685 (rhlE)
Enzymes [BR:
sbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SBO_0685 (rhlE)
Messenger RNA biogenesis [BR:
sbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SBO_0685 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ABB65361
ShiBASE_China:
SBO0685
UniProt:
Q323Z7
LinkDB
All DBs
Position
697661..699025
Genome browser
AA seq
454 aa
AA seq
DB search
MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK
RQNLLFSATFSDDIKALAEKLLQNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI
GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSSDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRGEGGAKSA
SAKPAEKPSRRLGDAKPAGEQQRRRRPRKPAAAQ
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgattctttgggtttaagccctgatatcctgcgcgccgttgccgagcagggt
taccgtgaacccacccctattcagcagcaggcgatccctgcggtgctggaaggccgcgac
ctgatggctagcgcccagaccggtaccggtaaaacagcgggctttacgctgccgctgttg
caacacctgatcactcgccagccgcacgccaaagggcgtcgtccggtacgtgcgctcatt
cttaccccgacccgtgaactggctgcgcagattggcgaaaacgtccgtgattacagcaaa
tatttgaacattcgttcgctggtggtgtttggcggtgtcagcattaacccgcaaatgatg
aagctgcgcggcggcgttgatgttctggtggcaacaccgggacgtttgctggacctggaa
catcaaaatgcagtgaagctggatcaggttgaaatcctcgtcctcgatgaagctgaccgc
atgctcgacatgggctttatccacgatatccgtcgcgtgttaacaaaactgccagcgaaa
cgccagaacctgctgttctctgcgaccttctctgacgatattaaagccctggcggaaaaa
ctgttgcaaaacccgctggaaatcgaagtggcacgccgcaataccgcgtctgatcaggtg
acccagcacgttcactttgtcgataagaaacgcaaacgcgaattgctgtcgcacatgatt
ggtaaagggaactggcagcaggtgctggtgtttacccgtaccaaacacggcgctaaccat
ctggctgagcagctcaataaagatggcatccgtagtgcggcgatccacgggaataaatcg
caaggtgcgcgtacccgtgcgctggctgattttaaatcgagtgacattcgcgtactggtg
gcgaccgatatcgctgcgcgcggtctggatatcgaagagttgccgcacgtcgtcaactat
gaactgccaaacgtaccggaagattatgtccaccgtatcgggcgtaccggtcgtgcggct
gctaccggtgaagcgttgtcgctggtgtgtgttgatgaacacaaactgctgcgtgatatc
gaaaaactgctgaaaaaagagatcccgcgcattgcgattccgggctatgagccggacccg
tcaatcaaagccgaaccgatccagaacggtcgccagcaacgtggcggcggcggtcgtggg
caaggtggtggtcgcggtcaacagcaaccacgccgtggggaaggtggcgcaaaatctgca
agcgcgaaacctgcagaaaaaccgtctcgccgcctcggcgatgccaaaccggcaggcgaa
caacaacgtcgccgccgtccgcgtaaacctgccgctgcgcagtaa
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