Shigella boydii Sb227 (serotype 4): SBO_3141
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Entry
SBO_3141 CDS
T00301
Symbol
cafA
Name
(GenBank) bundles of cytoplasmic filaments
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
sbo
Shigella boydii Sb227 (serotype 4)
Brite
KEGG Orthology (KO) [BR:
sbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbo03019
]
SBO_3141 (cafA)
03009 Ribosome biogenesis [BR:
sbo03009
]
SBO_3141 (cafA)
Messenger RNA biogenesis [BR:
sbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SBO_3141 (cafA)
Ribosome biogenesis [BR:
sbo03009
]
Prokaryotic type
rRNA processing factors
SBO_3141 (cafA)
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ABB67643
ShiBASE_China:
SBO3141
UniProt:
Q31WB5
LinkDB
All DBs
Position
3143606..3145093
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AA seq
495 aa
AA seq
DB search
MRKGINMTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQ
AAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGT
KGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAA
EGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVD
SRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLII
DQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE
DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV
KTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ
IEPLYNQEQFDVVMM
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgagaaaagggataaacatgacggctgaattgttagtaaacgtaacgccttcggaaacg
cgagtggcgtatattgatggcggtattctgcaggaaattcatattgaacgtgaggcgcga
cgcggaatagtaggcaatatctacaagggtcgtgtaagtcgtgtacttccgggtatgcag
gcggcttttgtagatattgggctggataaagccgcgtttcttcatgcatccgatatcatg
ccgcacaccgaatgtgtggcgggtgaagaacaaaagcaattcacggtgcgcgacatctcg
gaactggttcgtcaggggcaagatctgatggtgcaggtggtgaaagatccgcttggcact
aaaggtgcgcgcctgaccaccgatatcacgctgccttctcgctatctggtgtttatgcca
ggggcttctcacgttggggtttcccaacgtattgaaagcgaatcagaacgtgaacgcctg
aaaaaagtggtcgcagagtattgcgacgagcagggcgggtttatcatccgcaccgcagcg
gaaggggttggcgaggctgaactggcctccgatgccgcttatctgaaacgcgtctggacc
aaagttatggagcgtaaaaaacgcccgcagacccgttatcagctgtacggcgaactggcg
ctggcgcagcgtgttctgcgtgatttcgccgacgccgaactggaccgcattcgcgttgac
tcacgcctgacttacgaagcattgctggagtttacctcggagtacattcccgagatgacc
agcaagctggagcattacaccggacgccagccgattttcgatctctttgatgtcgaaaac
gaaatccagcgagcgctggaacgcaaagtagaactgaaatccggtggttatctgattatc
gaccagaccgaagcgatgaccaccgtggacatcaataccggagcgtttgtcggtcatcgc
aatctggacgacaccattttcaataccaatattgaagcgacgcaggctatcgctcgccag
ttacggttgcgtaatctgggtgggattatcattattgatttcatcgatatgaataatgaa
gatcaccgccgccgcgtgctgcactcgctggagcaggcgttgagcaaagaccgggtgaaa
accagcgttaatggtttttcggcgctggggctggtggagatgacgcgtaaacgcacccgc
gaaagcattgagcacgtactgtgtaacgaatgcccaacctgccacggtcgcggaacggtg
aaaaccgtggaaacggtatgctatgaaatcatgcgcgagattgttcgtgtccaccatgct
tacgactccgaccgtttcctggtctatgcttctccggcagtagctgaagccttgaaaggc
gaagagtcacactcgctggcggaagtggaaattttcgttggcaaacaggttaaagtacaa
attgaaccgctctataaccaggagcagtttgacgtcgtaatgatgtaa
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