Shigella boydii Sb227 (serotype 4): SBO_3184
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Entry
SBO_3184 CDS
T00301
Symbol
yrbI
Name
(GenBank) conserved hypothetical protein
KO
K03270
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:
3.1.3.45
]
Organism
sbo
Shigella boydii Sb227 (serotype 4)
Pathway
sbo00541
Biosynthesis of various nucleotide sugars
sbo01100
Metabolic pathways
sbo01250
Biosynthesis of nucleotide sugars
Module
sbo_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
sbo00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
SBO_3184 (yrbI)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
sbo01005
]
SBO_3184 (yrbI)
Enzymes [BR:
sbo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.45 3-deoxy-manno-octulosonate-8-phosphatase
SBO_3184 (yrbI)
Lipopolysaccharide biosynthesis proteins [BR:
sbo01005
]
Lipid A
SBO_3184 (yrbI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hydrolase_3
Hydrolase
HAD_2
S6PP
Motif
Other DBs
NCBI-ProteinID:
ABB67683
ShiBASE_China:
SBO3184
UniProt:
Q31W75
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All DBs
Position
complement(3192298..3192864)
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AA seq
188 aa
AA seq
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MSKAGASLATCYGPVSADVIAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGY
GIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSELLEKLAIAPENV
AYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKL
DEAKGQSI
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagcaggtgcgtcgcttgcgacctgttacggccctgtcagcgccgacgttata
gcaaaagcagagaacattcgtctgctgatcctcgacgttgatggcgtactgtcagatggc
ctgatttatatgggcaataacggcgaagagctgaaagcgttcaatgttcgtgacggttat
ggcattcgttgtgcgctcacctctgatattgaagtcgctatcattaccgggcgaaaggct
aaactggtagaagatcgttgtgccacattggggatcactcacttgtatcaggggcagtca
aacaaactgatcgcctttagcgaactgctggaaaaactggcgattgccccggaaaatgtg
gcttatgtcggcgatgatctcatcgactggccggtaatggaaaaagtgggtttaagcgtc
gccgtggccgatgctcatccactgttgatcccgcgcgccgattatgtgacgcgcattgct
ggcggtcgtggcgcagtgcgagaagtttgcgacttattactcctggcgcagggcaaactg
gatgaagccaaagggcaatcgatatga
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