Shigella boydii Sb227 (serotype 4): SBO_3834
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Entry
SBO_3834 CDS
T00301
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sbo
Shigella boydii Sb227 (serotype 4)
Pathway
sbo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SBO_3834 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbo03019
]
SBO_3834 (recQ)
03400 DNA repair and recombination proteins [BR:
sbo03400
]
SBO_3834 (recQ)
Enzymes [BR:
sbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SBO_3834 (recQ)
Messenger RNA biogenesis [BR:
sbo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SBO_3834 (recQ)
DNA repair and recombination proteins [BR:
sbo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SBO_3834 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ABB68292
ShiBASE_China:
SBO3834
UniProt:
Q31UG6
LinkDB
All DBs
Position
3855986..3857821
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AA seq
611 aa
AA seq
DB search
MNVAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQ
IPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRL
LYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFM
ALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKS
GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM
GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQG
QLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQI
ALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIH
LGLVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAK
LRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMCKLERFGKPFMAL
IRAHVDGDDEE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgtggcgcaggcggaagtgttgaatctggagtccggagctaaacaggttttacaa
gaaacctttggctaccaacagtttcgccccggccaggaagaaattatcgacactgtgctt
tccggtcgcgattgcctggtcgtcatgcccaccggtggcggaaaatccctttgctatcaa
attcctgccttattgctaaacggccttaccgtggttgtttcaccgctgatttcgttgatg
aaagatcaggtggatcaactgcaagccaacggcgtggcggcggcgtgccttaactcgacg
caaacccgcgagcagcaacttgaagtgatgacaggctgccgcaccgggcaaattcgtctg
ctttatatcgccccggaacgcctgatgctggataactttcttgagcatctggcgcactgg
aatccggtgttattagccgttgatgaagcgcactgtatctcccaatggggccacgatttc
cgcccggaatatgccgcgcttggtcagttacgccagcgtttcccgaccctgccgtttatg
gcgctgactgccacagccgacgacaccacgcgccaggatatcgtgcgcttgctggggctg
aacgatccgctgattcaaatcagcagttttgaccgtccgaatattcgctacatgctgatg
gagaagttcaaaccgctcgatcagttgatgcgctacgtgcaggaacagcgcggtaagtca
ggcattatctactgcaacagccgcgcgaaagtagaagacaccgctgcgcgcctgcaaagc
aagggaattagcgcggcggcctatcatgctgggctggaaaataatgttcgcgccgacgtg
caggaaaaatttcagcgcgatgacctgcaaattgtggtggcgacggtggcgttcggcatg
ggcatcaataaaccaaacgttcgcttcgtggtccactttgatattccgcgcaatatcgaa
tcctattatcaggaaaccggtcgcgccgggcgtgatggcctgcccgcggaagcgatgctg
ttttacgatccggccgatatggcgtggctgcgccgttgcctggaagagaagccgcagggg
cagttacaggatatcgaacgtcataaactcaatgcgatgggcgcttttgccgaagcgcaa
acttgccgtcgtctggtattgctgaactattttggcgaagggcggcaagagccgtgcggg
aactgcgatatctgcctcgatccgccgaaacagtacgacggttcaaccgatgctcagatt
gccctttccaccattggtcgtgtgaatcagcggtttgggatgggttatgtggtggaagtg
attcgtggtgctaataaccagcgtatccgcgactatggtcatgacaaactgaaagtctat
ggcatgggccgtgataaaagccatgaacattgggtgagcgtgatccgccagctgattcac
ctcggcctggtgacgcaaaatattgcccagcattctgccctacaactgacagaggccgcg
cgcccggtgctgcgcggcgaatcctctttgcaacttgccgtgccgcgtatcgtggcgctc
aaaccgaaagcgatgcagaaatcgttcggcggcaactatgatcgcaaactgttcgccaaa
ttacgcaaactgcgtaaatcgattgccgatgaaagtaatgtcccgccgtacgtggtgttt
aacgacgcaaccttgattgagatggctgaacagatgccgatcaccgccagcgaaatgctc
agcgttaacggcgttgggatgtgcaagctggaacgctttggtaaaccgtttatggcgctg
attcgtgcgcatgtcgatggcgacgacgaagagtag
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